Click here to switch to the map view.

The map label for this gene is amtR [C]

Identifier: 38233443

GI number: 38233443

Start: 823652

End: 824320

Strand: Reverse

Name: amtR [C]

Synonym: DIP0846

Alternate gene names: 38233443

Gene position: 824320-823652 (Counterclockwise)

Preceding gene: 38233444

Following gene: 38233440

Centisome position: 33.12

GC content: 54.56

Gene sequence:

>669_bases
ATGGCAGGAGCTGTAGGTCGTCCCCGTAAAAATAGTCCTCGGCGACGTGGAAGTACCGCCCGTGAGGAAATCCTTGATGC
CTCAGCGGAGCTGTTTACTACACAAGGTTTTGCTACCACGTCTACCCATCAAATCGCCGACGCAGTAGGAATTCGTCAAG
CCTCGCTGTACTACCACTTCCCGTCCAAGACGGAAATCTTCCTCACCCTGCTTCAGTCCACCGTGGCACCTTCAACGGCT
CTCGCAGAGGCCTTCGCGGATAACGAAGCACCAGCAGCGTTACGCTTGTGGGCATTAACGGCCACAGAATGCCGCCTGTT
GCTTTCAACGCGTTGGAATGTCGGACGCCTCTACCAATTGCCGGTTGCAGCTTCCGCAGAATTCGCTTCCTACCAAACAC
AGCGCGATCAGCTACGCCAGACGTTTAAAAACATTGCCTCCGAGATCCTCAACCCTGATGATCCACGTACAGATCTGCCA
TTCCACATCGCACTATCGGTGATTGAAATGCGCAGCAACGATGGTGTCGTACCCGAACCATTGCGCGATGATGAACTTCC
CGTTCTAGCAATCATGCTTGCCGACGCCGCACTCGCCGTCGTAGGTGCGGAACTGCCCGATGACCGCGTGGAATGGACAC
TGAACCTAATTCGCACCCTAAACGACTAA

Upstream 100 bases:

>100_bases
GATAGTAGGCTTTGAGCCCACGTCGTATAACATTTATTCGTTCATGGCGCTTTGCGCACATTTTTAAGGTTTTGTGAAAG
GAAAGGGGCAGGTACTCGTT

Downstream 100 bases:

>100_bases
TCCACTGCAGCGTGACGCTGCAGCAACCGATGTGCCAACGCAATGAGCGGCGTATCTACCATCTCCCCGTCGAGCTGAAA
AGCTCCGGGGTGTTTTTTCG

Product: TetR family regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcription Regulator AmtR; Regulatory Protein TetR; MalT Family Transcriptional Regulator; HTH-Type Pregulator; Transcriptional Regulator TetR Family Protein; LOW QUALITY PROTEIN TetR Family Transcriptional Regulator; Transcriptional Regulator; TetR Family Regulatory Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MAGAVGRPRKNSPRRRGSTAREEILDASAELFTTQGFATTSTHQIADAVGIRQASLYYHFPSKTEIFLTLLQSTVAPSTA
LAEAFADNEAPAALRLWALTATECRLLLSTRWNVGRLYQLPVAASAEFASYQTQRDQLRQTFKNIASEILNPDDPRTDLP
FHIALSVIEMRSNDGVVPEPLRDDELPVLAIMLADAALAVVGAELPDDRVEWTLNLIRTLND

Sequences:

>Translated_222_residues
MAGAVGRPRKNSPRRRGSTAREEILDASAELFTTQGFATTSTHQIADAVGIRQASLYYHFPSKTEIFLTLLQSTVAPSTA
LAEAFADNEAPAALRLWALTATECRLLLSTRWNVGRLYQLPVAASAEFASYQTQRDQLRQTFKNIASEILNPDDPRTDLP
FHIALSVIEMRSNDGVVPEPLRDDELPVLAIMLADAALAVVGAELPDDRVEWTLNLIRTLND
>Mature_221_residues
AGAVGRPRKNSPRRRGSTAREEILDASAELFTTQGFATTSTHQIADAVGIRQASLYYHFPSKTEIFLTLLQSTVAPSTAL
AEAFADNEAPAALRLWALTATECRLLLSTRWNVGRLYQLPVAASAEFASYQTQRDQLRQTFKNIASEILNPDDPRTDLPF
HIALSVIEMRSNDGVVPEPLRDDELPVLAIMLADAALAVVGAELPDDRVEWTLNLIRTLND

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24447; Mature: 24316

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGAVGRPRKNSPRRRGSTAREEILDASAELFTTQGFATTSTHQIADAVGIRQASLYYHF
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEEEEEEEC
PSKTEIFLTLLQSTVAPSTALAEAFADNEAPAALRLWALTATECRLLLSTRWNVGRLYQL
CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEC
PVAASAEFASYQTQRDQLRQTFKNIASEILNPDDPRTDLPFHIALSVIEMRSNDGVVPEP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
LRDDELPVLAIMLADAALAVVGAELPDDRVEWTLNLIRTLND
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGAVGRPRKNSPRRRGSTAREEILDASAELFTTQGFATTSTHQIADAVGIRQASLYYHF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEEEEEEEC
PSKTEIFLTLLQSTVAPSTALAEAFADNEAPAALRLWALTATECRLLLSTRWNVGRLYQL
CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEC
PVAASAEFASYQTQRDQLRQTFKNIASEILNPDDPRTDLPFHIALSVIEMRSNDGVVPEP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
LRDDELPVLAIMLADAALAVVGAELPDDRVEWTLNLIRTLND
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA