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The map label for this gene is nlpD [C]

Identifier: 38233433

GI number: 38233433

Start: 814166

End: 814882

Strand: Reverse

Name: nlpD [C]

Synonym: DIP0836

Alternate gene names: 38233433

Gene position: 814882-814166 (Counterclockwise)

Preceding gene: 38233440

Following gene: 38233431

Centisome position: 32.74

GC content: 54.53

Gene sequence:

>717_bases
ATGCAGCAGACGCAGCGCACAACCGGTGGTAAGCATCGCAAGCAAGCATCACCAGTTAAAGGCCGCGTTGCCGTCGTCGC
TTTGGCTACAGGCGCAGTTTCGAGCGCAGGCGCTACCGGCGCTTCCCTTGCTCACGCTACGCACGACAATTCCACTGTAA
AAATCAACCTTGCGTCGGATTCCACCACGCAGACCAATAACGATTCCCCTCAGGTTCTTTCCATCGCAGAGTTTAAACCT
GCGGCTTCTGACCTGAACCAGCAGCTTTCCAAAGCAATCCATTACAGCCAAGTGGTTGCTGAAAAAGATCTCGAGGCTCG
TACTCCTAAAATCAGCGTCCATACCCCTGCAAAAGGCACTCTGACTTCGCCATTCGGTATGCGTTGGGGCACACTGCACT
CTGGTGTGGACATCGCTAATGCAATGAACACCCCGATTTATTCCGTGATGGACGGTGTAGTAATCGATTCGGGCCCAGCA
TCCGGCTACGGCCAATGGATTCGTGTCCGTCACGAGGACGGCACCATCACCGTGTATGGGCATATGGAGACGCTCAACGT
TGCTGTCGGTGAAACGGTCACTGCTGGCCAGCAGATCGCAGGAATGGGCACTCGTGGTTTCTCTACTGGCGTTCACCTCC
ACTTTGAGGTTCATCCAGGCGGTGGCGATGCCGTAGATCCACAGTCTTGGCTTGCTGAGCACGGCATCTTTATCTAA

Upstream 100 bases:

>100_bases
CATAACGAGTTGGTTACAAAATCGAATGGGTTGTAACAAGCCGGATACGAGACACCAACTTAGAATCGTTACACAAAGTT
TTTACAGAAAGTTGAGCCTC

Downstream 100 bases:

>100_bases
ATAATCTAAATACTTTTGTGTGGGGCGCTTACGGGACTATTTCGTAAGCGCCCCACACACGTCCCCCCTAAGACGTCCTA
GAGCTTTTCCATAGGCACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MQQTQRTTGGKHRKQASPVKGRVAVVALATGAVSSAGATGASLAHATHDNSTVKINLASDSTTQTNNDSPQVLSIAEFKP
AASDLNQQLSKAIHYSQVVAEKDLEARTPKISVHTPAKGTLTSPFGMRWGTLHSGVDIANAMNTPIYSVMDGVVIDSGPA
SGYGQWIRVRHEDGTITVYGHMETLNVAVGETVTAGQQIAGMGTRGFSTGVHLHFEVHPGGGDAVDPQSWLAEHGIFI

Sequences:

>Translated_238_residues
MQQTQRTTGGKHRKQASPVKGRVAVVALATGAVSSAGATGASLAHATHDNSTVKINLASDSTTQTNNDSPQVLSIAEFKP
AASDLNQQLSKAIHYSQVVAEKDLEARTPKISVHTPAKGTLTSPFGMRWGTLHSGVDIANAMNTPIYSVMDGVVIDSGPA
SGYGQWIRVRHEDGTITVYGHMETLNVAVGETVTAGQQIAGMGTRGFSTGVHLHFEVHPGGGDAVDPQSWLAEHGIFI
>Mature_238_residues
MQQTQRTTGGKHRKQASPVKGRVAVVALATGAVSSAGATGASLAHATHDNSTVKINLASDSTTQTNNDSPQVLSIAEFKP
AASDLNQQLSKAIHYSQVVAEKDLEARTPKISVHTPAKGTLTSPFGMRWGTLHSGVDIANAMNTPIYSVMDGVVIDSGPA
SGYGQWIRVRHEDGTITVYGHMETLNVAVGETVTAGQQIAGMGTRGFSTGVHLHFEVHPGGGDAVDPQSWLAEHGIFI

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=35.8333333333333, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082297, Length=152, Percent_Identity=32.2368421052632, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082174, Length=121, Percent_Identity=35.5371900826446, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87081989, Length=85, Percent_Identity=40, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24945; Mature: 24945

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTQRTTGGKHRKQASPVKGRVAVVALATGAVSSAGATGASLAHATHDNSTVKINLASD
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCC
STTQTNNDSPQVLSIAEFKPAASDLNQQLSKAIHYSQVVAEKDLEARTPKISVHTPAKGT
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
LTSPFGMRWGTLHSGVDIANAMNTPIYSVMDGVVIDSGPASGYGQWIRVRHEDGTITVYG
CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCEEEECCCCCCCCEEEEEEECCCEEEEEE
HMETLNVAVGETVTAGQQIAGMGTRGFSTGVHLHFEVHPGGGDAVDPQSWLAEHGIFI
EEEEEEEECCCEECCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MQQTQRTTGGKHRKQASPVKGRVAVVALATGAVSSAGATGASLAHATHDNSTVKINLASD
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCC
STTQTNNDSPQVLSIAEFKPAASDLNQQLSKAIHYSQVVAEKDLEARTPKISVHTPAKGT
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
LTSPFGMRWGTLHSGVDIANAMNTPIYSVMDGVVIDSGPASGYGQWIRVRHEDGTITVYG
CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCEEEECCCCCCCCEEEEEEECCCEEEEEE
HMETLNVAVGETVTAGQQIAGMGTRGFSTGVHLHFEVHPGGGDAVDPQSWLAEHGIFI
EEEEEEEECCCEECCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]