| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is yhdJ [C]
Identifier: 38233404
GI number: 38233404
Start: 783728
End: 785731
Strand: Reverse
Name: yhdJ [C]
Synonym: DIP0805
Alternate gene names: 38233404
Gene position: 785731-783728 (Counterclockwise)
Preceding gene: 38233407
Following gene: 38233403
Centisome position: 31.57
GC content: 58.58
Gene sequence:
>2004_bases GTGACCCAACAGAAGCTGGAACTGACCTGGTTCAACAAAGACCAGGCACTCATTCCCCAGGAACGCGGTCGCTACGGCTA CGCGTGGGTAGACCCCCACGACCCGCGCTACTGCCAGACCCATTACCTGATCGAGGGCGAGACCATTACTGGCGAGCAGG CACCGAAGCAGGACGGGACGCAATACGGCGAACGTGCCGACCTCGAACCCACCACCGACAACCTGCTCATTAACGGCGAG TCCGGCGACGTGCTCGAAGCCCTCACCCGCGTGCCAGAGCTGGCGGACAAGTACGTGGGCAAGGTCAAGTGCATCTACAT CGACCCACCATTCAACACGGCACAGACCTTTGCCAATTACGAGGACAACCTCGAACACTCCGTATGGCTGACCATGATGC GAGACAGACTCCTCCACATGAAGAAGCTCCTGTCCGAGGACGGGTCCATCTGGGTGCACCTCGATGACGTCGAAAACCAC CGTATGCGCTTGCTCATGGACGAGGTCTTTGGTGCGGGTAACTTTGTGGCCGAGGTGGTGTGGGAAAAGACCTACTCCCC ACGCAATGACTCGAAGGGCATCCCGGCAGTTACTGACACGATCTTGGTCTATCGCAAGTCAGACCAATTCTCTCCGAACC GTCTGCCACGTACGGCGGAGATGAACGCTCGATACAAAAATCCCGACCATGACCGCAATGGTCCCTGGAAAAGTGGGGAT ACAACTGCGCCAGGAAATATGTCTGGAAAGGTTCAGCACCCAAGCGTTTTTGCAATTCAACACCCGGTCACCGGTCAGTT TATCTATCCAACCTATGGCCGTATGTGGTGTTTCGGACAAGAGCGTATTTTGTCCAGTCTCAGTCGATATGCACCATATC GACTGGCAGAACCTGATATGAAAAGCCGAAGCAAGCGGACCGGCATTCCCGAGGAGCAGCTGCGTGCAGACGTATTTGAC TTGGTGGTAGACGAGACTGCTCGACAAGGAGACAAGACCCAGGCTTTCCGAAACATCAGCCTGGGCAATTGGCCTGAGTT TTTCATCACCGACAAAGGGTTTGGCCGAAAAGTTCCGATGTCTAAGTCGGACGGGCGTGTAGCTCCTAATTTGCTGAGGT GGGAAGAAGTCGGCCACACAGACGGGGCAAAGAAGGAAATTACAGCGCTTTTCCCTAACCAGGCGGCTTTCTCAACCCCA AAGCCCGAGCGTCTGCTAGAGCGCGTCATCCACATCGCCACCAACCCAGGTGACATCGTGCTCGATTGCTTTGCAGGCTC CGGCACCACGGCCGCGGTCGCTCACAAGATGGGCCGGCGCTGGGTCACCTGCGAGTTGCTGGAGGACACATTCAACCGGT TTACCGTCCCGCGCCTGACCAAAGTAGTGAGCGGCGAGGACATGGGCGGTATCACCACAACCAAGGGCGAGCGCGTGGAC GCCACCGCCGACGGCCTGCCAGAGGGCATGTCCCCAGAGGATGCACAGAAGTTCACCTCGTTGCTGAACAAGGTGATTAA GAACAACCCCGAGCTCAAGAACAGCGCACAGGTCAAGGAGCTCAAGGCCGCGACCAAGACCCGCAACAGTGGCGACGTCG TGAACTGGCGCGGTGGTGGCTCGTTCACGATCGCTACCTTGTCGAAGCCGTGTTTCGACGTGGACGAGGAACTGGGACTG ACCATCTTGACTGAGCACGCGGACGCGGACAACCTCGCGCGCTCCGTCGCGGCACACCTGCGCTTTACCCTCACCCCTGA ACACCCCGTGTTCCCGGGACGACGCGGAAACATGTGGCTGTACGTCACCCGCCAGCCGGTGGACGAGCGGGTCATGGACG AGTTGCTGTCCTACCTCAGCGAGGGCGAAGCCGTCACCGTCGCATCGACCTCGGTCCTGCCCGATCACACCACCTACCTG CACAAGCGGGCCAAGGGCTCGCGCGCACTGTCCATCCCAGACGGGATGTTCACCCACACGCTGAGCACGAAAGACGAGGC ATAA
Upstream 100 bases:
>100_bases TGCGGCACGTCCCCTCAAAAACCGGCCCGGACCTGCTACGATAGGTCCAATGTCTTTCCGCCGCGAGTGCGGACACCTAC GCCCCGATGGAGTTTCACCC
Downstream 100 bases:
>100_bases GACATGGCTGTTCCAGGTTTCACCTTTGACGAGGCCCTGCTCACCGAAATCGCGGCCAGCTTCCAGCTCCGTGCCTCCAA CATCAACGCGCTCACCGCAC
Product: putative DNA methylase
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 667; Mature: 666
Protein sequence:
>667_residues MTQQKLELTWFNKDQALIPQERGRYGYAWVDPHDPRYCQTHYLIEGETITGEQAPKQDGTQYGERADLEPTTDNLLINGE SGDVLEALTRVPELADKYVGKVKCIYIDPPFNTAQTFANYEDNLEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENH RMRLLMDEVFGAGNFVAEVVWEKTYSPRNDSKGIPAVTDTILVYRKSDQFSPNRLPRTAEMNARYKNPDHDRNGPWKSGD TTAPGNMSGKVQHPSVFAIQHPVTGQFIYPTYGRMWCFGQERILSSLSRYAPYRLAEPDMKSRSKRTGIPEEQLRADVFD LVVDETARQGDKTQAFRNISLGNWPEFFITDKGFGRKVPMSKSDGRVAPNLLRWEEVGHTDGAKKEITALFPNQAAFSTP KPERLLERVIHIATNPGDIVLDCFAGSGTTAAVAHKMGRRWVTCELLEDTFNRFTVPRLTKVVSGEDMGGITTTKGERVD ATADGLPEGMSPEDAQKFTSLLNKVIKNNPELKNSAQVKELKAATKTRNSGDVVNWRGGGSFTIATLSKPCFDVDEELGL TILTEHADADNLARSVAAHLRFTLTPEHPVFPGRRGNMWLYVTRQPVDERVMDELLSYLSEGEAVTVASTSVLPDHTTYL HKRAKGSRALSIPDGMFTHTLSTKDEA
Sequences:
>Translated_667_residues MTQQKLELTWFNKDQALIPQERGRYGYAWVDPHDPRYCQTHYLIEGETITGEQAPKQDGTQYGERADLEPTTDNLLINGE SGDVLEALTRVPELADKYVGKVKCIYIDPPFNTAQTFANYEDNLEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENH RMRLLMDEVFGAGNFVAEVVWEKTYSPRNDSKGIPAVTDTILVYRKSDQFSPNRLPRTAEMNARYKNPDHDRNGPWKSGD TTAPGNMSGKVQHPSVFAIQHPVTGQFIYPTYGRMWCFGQERILSSLSRYAPYRLAEPDMKSRSKRTGIPEEQLRADVFD LVVDETARQGDKTQAFRNISLGNWPEFFITDKGFGRKVPMSKSDGRVAPNLLRWEEVGHTDGAKKEITALFPNQAAFSTP KPERLLERVIHIATNPGDIVLDCFAGSGTTAAVAHKMGRRWVTCELLEDTFNRFTVPRLTKVVSGEDMGGITTTKGERVD ATADGLPEGMSPEDAQKFTSLLNKVIKNNPELKNSAQVKELKAATKTRNSGDVVNWRGGGSFTIATLSKPCFDVDEELGL TILTEHADADNLARSVAAHLRFTLTPEHPVFPGRRGNMWLYVTRQPVDERVMDELLSYLSEGEAVTVASTSVLPDHTTYL HKRAKGSRALSIPDGMFTHTLSTKDEA >Mature_666_residues TQQKLELTWFNKDQALIPQERGRYGYAWVDPHDPRYCQTHYLIEGETITGEQAPKQDGTQYGERADLEPTTDNLLINGES GDVLEALTRVPELADKYVGKVKCIYIDPPFNTAQTFANYEDNLEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENHR MRLLMDEVFGAGNFVAEVVWEKTYSPRNDSKGIPAVTDTILVYRKSDQFSPNRLPRTAEMNARYKNPDHDRNGPWKSGDT TAPGNMSGKVQHPSVFAIQHPVTGQFIYPTYGRMWCFGQERILSSLSRYAPYRLAEPDMKSRSKRTGIPEEQLRADVFDL VVDETARQGDKTQAFRNISLGNWPEFFITDKGFGRKVPMSKSDGRVAPNLLRWEEVGHTDGAKKEITALFPNQAAFSTPK PERLLERVIHIATNPGDIVLDCFAGSGTTAAVAHKMGRRWVTCELLEDTFNRFTVPRLTKVVSGEDMGGITTTKGERVDA TADGLPEGMSPEDAQKFTSLLNKVIKNNPELKNSAQVKELKAATKTRNSGDVVNWRGGGSFTIATLSKPCFDVDEELGLT ILTEHADADNLARSVAAHLRFTLTPEHPVFPGRRGNMWLYVTRQPVDERVMDELLSYLSEGEAVTVASTSVLPDHTTYLH KRAKGSRALSIPDGMFTHTLSTKDEA
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 74898; Mature: 74767
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQKLELTWFNKDQALIPQERGRYGYAWVDPHDPRYCQTHYLIEGETITGEQAPKQDGT CCCCEEEEEEECCCCCCCCHHCCCEEEEEECCCCCCEEEEEEEEECCEECCCCCCCCCCH QYGERADLEPTTDNLLINGESGDVLEALTRVPELADKYVGKVKCIYIDPPFNTAQTFANY HCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCC EDNLEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENHRMRLLMDEVFGAGNFVAEVV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHH WEKTYSPRNDSKGIPAVTDTILVYRKSDQFSPNRLPRTAEMNARYKNPDHDRNGPWKSGD HHHCCCCCCCCCCCCHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTAPGNMSGKVQHPSVFAIQHPVTGQFIYPTYGRMWCFGQERILSSLSRYAPYRLAEPDM CCCCCCCCCCEECCEEEEEECCCCCEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCCCH KSRSKRTGIPEEQLRADVFDLVVDETARQGDKTQAFRNISLGNWPEFFITDKGFGRKVPM HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCC SKSDGRVAPNLLRWEEVGHTDGAKKEITALFPNQAAFSTPKPERLLERVIHIATNPGDIV CCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEE LDCFAGSGTTAAVAHKMGRRWVTCELLEDTFNRFTVPRLTKVVSGEDMGGITTTKGERVD EEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCCCCC ATADGLPEGMSPEDAQKFTSLLNKVIKNNPELKNSAQVKELKAATKTRNSGDVVNWRGGG CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCC SFTIATLSKPCFDVDEELGLTILTEHADADNLARSVAAHLRFTLTPEHPVFPGRRGNMWL CEEEEECCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEE YVTRQPVDERVMDELLSYLSEGEAVTVASTSVLPDHTTYLHKRAKGSRALSIPDGMFTHT EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEECCCCCEEEE LSTKDEA CCCCCCC >Mature Secondary Structure TQQKLELTWFNKDQALIPQERGRYGYAWVDPHDPRYCQTHYLIEGETITGEQAPKQDGT CCCEEEEEEECCCCCCCCHHCCCEEEEEECCCCCCEEEEEEEEECCEECCCCCCCCCCH QYGERADLEPTTDNLLINGESGDVLEALTRVPELADKYVGKVKCIYIDPPFNTAQTFANY HCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCC EDNLEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENHRMRLLMDEVFGAGNFVAEVV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHH WEKTYSPRNDSKGIPAVTDTILVYRKSDQFSPNRLPRTAEMNARYKNPDHDRNGPWKSGD HHHCCCCCCCCCCCCHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTAPGNMSGKVQHPSVFAIQHPVTGQFIYPTYGRMWCFGQERILSSLSRYAPYRLAEPDM CCCCCCCCCCEECCEEEEEECCCCCEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCCCH KSRSKRTGIPEEQLRADVFDLVVDETARQGDKTQAFRNISLGNWPEFFITDKGFGRKVPM HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCC SKSDGRVAPNLLRWEEVGHTDGAKKEITALFPNQAAFSTPKPERLLERVIHIATNPGDIV CCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEE LDCFAGSGTTAAVAHKMGRRWVTCELLEDTFNRFTVPRLTKVVSGEDMGGITTTKGERVD EEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCCCCC ATADGLPEGMSPEDAQKFTSLLNKVIKNNPELKNSAQVKELKAATKTRNSGDVVNWRGGG CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCC SFTIATLSKPCFDVDEELGLTILTEHADADNLARSVAAHLRFTLTPEHPVFPGRRGNMWL CEEEEECCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEE YVTRQPVDERVMDELLSYLSEGEAVTVASTSVLPDHTTYLHKRAKGSRALSIPDGMFTHT EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEECCCCCEEEE LSTKDEA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]