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The map label for this gene is rpoE [H]

Identifier: 38233316

GI number: 38233316

Start: 684494

End: 685117

Strand: Direct

Name: rpoE [H]

Synonym: DIP0709

Alternate gene names: 38233316

Gene position: 684494-685117 (Clockwise)

Preceding gene: 38233314

Following gene: 38233317

Centisome position: 27.5

GC content: 50.32

Gene sequence:

>624_bases
GTGGCTACGAAAACAAGCGACCTTGACGCACGTTTCGAGCGTGACGCGCTACCGTTGCTCGATCAACTCTATGGTGGCGC
ACTCCGGATGACGCGTAACCCAGCAGACGCTGAGGACCTAGTCCAAGAAACTTACGTTAAGGCATATCAAGCCTTCAATA
GCTTTAGCGAGGGAACCAACCTCAAAGCATGGCTGTACCGCATTATGACCAATACGTATATCAATTCGTATCGGAAAAAG
AAGCGCCAGCCTACGCAGCAATCTTCTGAAGATGTGACCGATCATCAGCTATTGGCCACGTCCTCCCATGAATCAGTCGG
TTTAGAATCCGCTGAGGTGGAAGCCTTGAAAAACCTTCCTAATCAGCGCATTGCCCAAGCTATGAACGACCTCAGCGAGG
ACTACCGCATGGTCGTTTACTACGCAGATGTTGAGGGTTTGGCATACAAAGAGATCGCAGAGATCATGGGTACCCCACTG
GGAACCGTGATGAGTCGACTCCATCGTGGAAGAAAACAGTTGCGTGAGGCGTTGAAAGACGTGGCGCAAGAACACGGAAT
TGCGGTTGAGGATAAACATGCAGATCACACCACTGATACTGCAGGAAGGAAGAACAAAGCATGA

Upstream 100 bases:

>100_bases
CAGCTTCCAACACAGCGAGTGCAGGTGTAGCACCGGACGGCTTTTTCTTGCTCATTTATGCCTCCTACTAGAATGGTTTT
AACAATATCTAAGGAGACCA

Downstream 100 bases:

>100_bases
GCCACGAGGGATGTTCTTGTTCCGAATTACGCGAGTACATGTACGCCTTACTCGACAGGGAGCTTTCTCCAGTCGATTGT
GCTCGCCTGCAGGCGCACTT

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MATKTSDLDARFERDALPLLDQLYGGALRMTRNPADAEDLVQETYVKAYQAFNSFSEGTNLKAWLYRIMTNTYINSYRKK
KRQPTQQSSEDVTDHQLLATSSHESVGLESAEVEALKNLPNQRIAQAMNDLSEDYRMVVYYADVEGLAYKEIAEIMGTPL
GTVMSRLHRGRKQLREALKDVAQEHGIAVEDKHADHTTDTAGRKNKA

Sequences:

>Translated_207_residues
MATKTSDLDARFERDALPLLDQLYGGALRMTRNPADAEDLVQETYVKAYQAFNSFSEGTNLKAWLYRIMTNTYINSYRKK
KRQPTQQSSEDVTDHQLLATSSHESVGLESAEVEALKNLPNQRIAQAMNDLSEDYRMVVYYADVEGLAYKEIAEIMGTPL
GTVMSRLHRGRKQLREALKDVAQEHGIAVEDKHADHTTDTAGRKNKA
>Mature_206_residues
ATKTSDLDARFERDALPLLDQLYGGALRMTRNPADAEDLVQETYVKAYQAFNSFSEGTNLKAWLYRIMTNTYINSYRKKK
RQPTQQSSEDVTDHQLLATSSHESVGLESAEVEALKNLPNQRIAQAMNDLSEDYRMVVYYADVEGLAYKEIAEIMGTPLG
TVMSRLHRGRKQLREALKDVAQEHGIAVEDKHADHTTDTAGRKNKA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=151, Percent_Identity=33.7748344370861, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23385; Mature: 23254

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKTSDLDARFERDALPLLDQLYGGALRMTRNPADAEDLVQETYVKAYQAFNSFSEGTN
CCCCCCCHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
LKAWLYRIMTNTYINSYRKKKRQPTQQSSEDVTDHQLLATSSHESVGLESAEVEALKNLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCC
NQRIAQAMNDLSEDYRMVVYYADVEGLAYKEIAEIMGTPLGTVMSRLHRGRKQLREALKD
HHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VAQEHGIAVEDKHADHTTDTAGRKNKA
HHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATKTSDLDARFERDALPLLDQLYGGALRMTRNPADAEDLVQETYVKAYQAFNSFSEGTN
CCCCCCHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
LKAWLYRIMTNTYINSYRKKKRQPTQQSSEDVTDHQLLATSSHESVGLESAEVEALKNLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCC
NQRIAQAMNDLSEDYRMVVYYADVEGLAYKEIAEIMGTPLGTVMSRLHRGRKQLREALKD
HHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VAQEHGIAVEDKHADHTTDTAGRKNKA
HHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]