Click here to switch to the map view.

The map label for this gene is hupC [H]

Identifier: 38233281

GI number: 38233281

Start: 651382

End: 652536

Strand: Direct

Name: hupC [H]

Synonym: DIP0674

Alternate gene names: 38233281

Gene position: 651382-652536 (Clockwise)

Preceding gene: 38233280

Following gene: 38233282

Centisome position: 26.17

GC content: 56.45

Gene sequence:

>1155_bases
ATGAAACTCATCCACGTCGCACAGTCCTACAGTGTGCGCAAGCTCAGCCCAGGGCGTCTGCTCGCCTTGGCTGCTGCGGC
ACCTGAGCATACTGAGGACCCCATCGACCACGCACTAGCCAACTCGCTAGCAGTCAATCGCCCCGACATTGATCTGCCAC
AGGCGTCGGCATATGAGCCAGCAACTCCGCAACGCAAGTACTCACTCGCCCGAGTGGACAACTTTCGCATGGCCGGTGAA
GACCGCCCCGTGACCATCATGCGTGGCGACCTCGCCACCGTGATGAGCAAAGCTCACGCTACCCGTGAGGAAAAAACCCT
CCTAGAGCGCAACGCTGATGTGCTGACCAAAAGCGGTCGACGCTGCCTCGGCATTGCCACCAAAGAAGCCGATGGCAGAT
TCCACATGGAGGGATTCGTCGCCGTTGGTGTAGAAGATGACGATGAAATTCGCCAGCACAGTGGCCGCAGCGAATGGGTG
CGCGTCAACGTCTGGTCTGGCATGCTGCGCTTCCAACACTGGGCCAACATGTTCCTCATCATTGCGATGACACTCACCGG
CTACTACATCATGGACCCCTACTACCGACCCACCGGCGGCGACGTGGGCTACATGATGGGATGGATTCGTCTTATTCACT
TTGTTGCAGGATTCCTTTGGATCGCCCTAGGACTTTCCCGCGTGGTCTTGGCATTTACGTCCAAAGACCGACAAATGCGC
TGGCGAGCCTTCTGGCCACTAAATAACAAACAGGACTTTAAAAACCTACTGGGCATCATCCAGTACTACGCGTTTATCAA
ACGGCACGGCCCGTTATTCTTGGCACACAACCCACTCCAGCAGCTGTCCTATACCGGCATCTACGTGCTGTGTTTGGCAC
AGATGGTCACCGGCATGACCCTTTACGGCCTTGCCAACCAAACCAACTGGTTCTGGATCATGATGTCCTACCCAGCACAC
TGGTGGGGAATCCCCGTGATTCGTCTGATTCACGCCGTGATCATGTACATCATCTGGGCGTTCGTAATCATTCACGTCTA
CCTAGCTGTGCGTGCCGACGCCCTCGAACGCCATGGAGGTGTCTCCTCTATGTTCAACGGTGCCGTATGGATGCGTCGAG
GTGCGCGCCCAGTCGACGCCCCAGAGATCGGATAA

Upstream 100 bases:

>100_bases
TGGAACCACTACGCACCATCCACTCCTTTGACCCATGCATGTCCTGCGCAGTCCATGTTCTCGATGTGGAGGGACACGAA
GAATTCCAGGTGATGACGTC

Downstream 100 bases:

>100_bases
CGAAAACAGCGTGATCACAGTAATCGGAGTAGGAAACCCAGTCATGGGAGACGACGGCGCAGGCCTCGCAGTTTTGCGCC
GTCTCCAAGGCATTACCAAT

Product: putative Ni/Fe-hydrogenase B-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKLIHVAQSYSVRKLSPGRLLALAAAAPEHTEDPIDHALANSLAVNRPDIDLPQASAYEPATPQRKYSLARVDNFRMAGE
DRPVTIMRGDLATVMSKAHATREEKTLLERNADVLTKSGRRCLGIATKEADGRFHMEGFVAVGVEDDDEIRQHSGRSEWV
RVNVWSGMLRFQHWANMFLIIAMTLTGYYIMDPYYRPTGGDVGYMMGWIRLIHFVAGFLWIALGLSRVVLAFTSKDRQMR
WRAFWPLNNKQDFKNLLGIIQYYAFIKRHGPLFLAHNPLQQLSYTGIYVLCLAQMVTGMTLYGLANQTNWFWIMMSYPAH
WWGIPVIRLIHAVIMYIIWAFVIIHVYLAVRADALERHGGVSSMFNGAVWMRRGARPVDAPEIG

Sequences:

>Translated_384_residues
MKLIHVAQSYSVRKLSPGRLLALAAAAPEHTEDPIDHALANSLAVNRPDIDLPQASAYEPATPQRKYSLARVDNFRMAGE
DRPVTIMRGDLATVMSKAHATREEKTLLERNADVLTKSGRRCLGIATKEADGRFHMEGFVAVGVEDDDEIRQHSGRSEWV
RVNVWSGMLRFQHWANMFLIIAMTLTGYYIMDPYYRPTGGDVGYMMGWIRLIHFVAGFLWIALGLSRVVLAFTSKDRQMR
WRAFWPLNNKQDFKNLLGIIQYYAFIKRHGPLFLAHNPLQQLSYTGIYVLCLAQMVTGMTLYGLANQTNWFWIMMSYPAH
WWGIPVIRLIHAVIMYIIWAFVIIHVYLAVRADALERHGGVSSMFNGAVWMRRGARPVDAPEIG
>Mature_384_residues
MKLIHVAQSYSVRKLSPGRLLALAAAAPEHTEDPIDHALANSLAVNRPDIDLPQASAYEPATPQRKYSLARVDNFRMAGE
DRPVTIMRGDLATVMSKAHATREEKTLLERNADVLTKSGRRCLGIATKEADGRFHMEGFVAVGVEDDDEIRQHSGRSEWV
RVNVWSGMLRFQHWANMFLIIAMTLTGYYIMDPYYRPTGGDVGYMMGWIRLIHFVAGFLWIALGLSRVVLAFTSKDRQMR
WRAFWPLNNKQDFKNLLGIIQYYAFIKRHGPLFLAHNPLQQLSYTGIYVLCLAQMVTGMTLYGLANQTNWFWIMMSYPAH
WWGIPVIRLIHAVIMYIIWAFVIIHVYLAVRADALERHGGVSSMFNGAVWMRRGARPVDAPEIG

Specific function: B-type cytochrome involved in electron transfer from hydrogenase to oxygen [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=207, Percent_Identity=29.951690821256, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 43755; Mature: 43755

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIHVAQSYSVRKLSPGRLLALAAAAPEHTEDPIDHALANSLAVNRPDIDLPQASAYEP
CCEEEECCCCCCEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
ATPQRKYSLARVDNFRMAGEDRPVTIMRGDLATVMSKAHATREEKTLLERNADVLTKSGR
CCCHHHHHHHHHCCEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
RCLGIATKEADGRFHMEGFVAVGVEDDDEIRQHSGRSEWVRVNVWSGMLRFQHWANMFLI
EEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
IAMTLTGYYIMDPYYRPTGGDVGYMMGWIRLIHFVAGFLWIALGLSRVVLAFTSKDRQMR
HHHHHCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
WRAFWPLNNKQDFKNLLGIIQYYAFIKRHGPLFLAHNPLQQLSYTGIYVLCLAQMVTGMT
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCEE
LYGLANQTNWFWIMMSYPAHWWGIPVIRLIHAVIMYIIWAFVIIHVYLAVRADALERHGG
EEEECCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VSSMFNGAVWMRRGARPVDAPEIG
HHHHHCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKLIHVAQSYSVRKLSPGRLLALAAAAPEHTEDPIDHALANSLAVNRPDIDLPQASAYEP
CCEEEECCCCCCEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
ATPQRKYSLARVDNFRMAGEDRPVTIMRGDLATVMSKAHATREEKTLLERNADVLTKSGR
CCCHHHHHHHHHCCEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
RCLGIATKEADGRFHMEGFVAVGVEDDDEIRQHSGRSEWVRVNVWSGMLRFQHWANMFLI
EEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
IAMTLTGYYIMDPYYRPTGGDVGYMMGWIRLIHFVAGFLWIALGLSRVVLAFTSKDRQMR
HHHHHCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
WRAFWPLNNKQDFKNLLGIIQYYAFIKRHGPLFLAHNPLQQLSYTGIYVLCLAQMVTGMT
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCEE
LYGLANQTNWFWIMMSYPAHWWGIPVIRLIHAVIMYIIWAFVIIHVYLAVRADALERHGG
EEEECCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VSSMFNGAVWMRRGARPVDAPEIG
HHHHHCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8230232; 8163174; 12597275; 3054886 [H]