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The map label for this gene is ytbD [H]

Identifier: 38233239

GI number: 38233239

Start: 602928

End: 604208

Strand: Direct

Name: ytbD [H]

Synonym: DIP0632

Alternate gene names: 38233239

Gene position: 602928-604208 (Clockwise)

Preceding gene: 38233236

Following gene: 38233240

Centisome position: 24.23

GC content: 54.64

Gene sequence:

>1281_bases
ATGGGGGACGCTCATCAGGGAAACATGCAAACGCTGTTAAGGTATCTCGTCGTGCTTGTCAACCACCTCAATAAAAGAAA
ACCTGTACCCCGCCAAACAGAGATCACTCATCGCCACCGACTCATCGCCATGTTGGCGTTGGCGCTCGGCGGATTTGGTA
TCGGTGTTACCGAATTTGTCTCCATGGGATTGCTCAGCCTTATCGCTGAGGACTTCAACGTGGCGGAGTCCACTGCCGGT
CACGTGATTACCGCCTATGCGATGGGCGTGGTCGTCGGTGCGCCTGTCATCACCGCTTTTACCGGAATGATTCCGCGCCG
ACGTCTACTGATCTTGTTGATGATTGCCTTTACAATCGGCAACGCGTTGACAGTATTTACCACTTCTTATCCTGTGCTGA
TGGCTGCACGCTTTTTAGCTGGCTTGCCGCATGGTGCGTTTTTCTCAGTAGCGGGCCTTGCCGTGGCGTCGATGGCCCCT
GAAGGGCAACGCGGCCGTGCTCTCGCTTTTGTCGGCATGGGATTGCCCGTAGCGACGGTGGTCGGTGTACCCGCTGTCCA
AGCTCTGGGATTTGCTACCACGTGGAAAGCCGCGTACGTGGTGGTCACCATCATCGGTGCTATTACCTTGGCATTGTTGT
GGACGCTCATGCCGCATATGTCCAAGATGAAACCGACGAGCCCACTCACAGAACTCGGTGCGTTAAAGAACGGTCAAGTT
TGGGCGTCACTGCTGATCGGTTCGGTGGGCTTTGGTGGCATGTTTGCTGTGTACACCTATATCTCTTGGACGATGACGCA
GCGCGCGGGTTTGCCTGAGGCGCTCATGTGGATCGTGCTGATGGCCTATGGACTTGGCATGATTGCGGGCAATTTTATCG
GCGGACGCCTCTCCGACTGGAGTGTGGAATACGGAATTCTTACTGCTCTTATCTGCATTGTGCTCACTTTGGTGAGTTTC
TACTTCACCAGTGCCTATGCGTGGATCGCCATCATCAACTTTGCTCTGGTGGGGCTTTCCGGTTCGATGCTCATCCCGTC
TCTTCAGATCCGACTTATGGACGTTGCCGGTCGTGCCCAGACCCTAGCTGCTGCACTTAACCACTCTGCGCTTAACATCG
CGAATGCTTGTGGCGCACTGCTTGGTGGCGTAGTGATCAGCGCAGGATATAGCTATTCTGCTCCTGCTCTTGCAGGCGCT
GCTTTAGGTTGTGCCGCCATCATCATTTGGATCCCAGCGCATATCACGCGCAGCAAACAAGAACGCAAACAGCACAGCTA
G

Upstream 100 bases:

>100_bases
TAAAAACGCCCTTAGCTGGGCTTTGAGTATGGGGCAGCGGGGGTAAAAACAGTACAAGCGTCCTGTTTCGCGGGTATTGT
CGCGCGCTACAACGTGGGGT

Downstream 100 bases:

>100_bases
GATGGCCAGCATGCAAATTACAACAGTTAACGTCAATGGAATTCGTGCTGCCGTCAAGCAGCGTAGCGACGCCAACCGCG
GAATGCTTCCGTGGCTAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MGDAHQGNMQTLLRYLVVLVNHLNKRKPVPRQTEITHRHRLIAMLALALGGFGIGVTEFVSMGLLSLIAEDFNVAESTAG
HVITAYAMGVVVGAPVITAFTGMIPRRRLLILLMIAFTIGNALTVFTTSYPVLMAARFLAGLPHGAFFSVAGLAVASMAP
EGQRGRALAFVGMGLPVATVVGVPAVQALGFATTWKAAYVVVTIIGAITLALLWTLMPHMSKMKPTSPLTELGALKNGQV
WASLLIGSVGFGGMFAVYTYISWTMTQRAGLPEALMWIVLMAYGLGMIAGNFIGGRLSDWSVEYGILTALICIVLTLVSF
YFTSAYAWIAIINFALVGLSGSMLIPSLQIRLMDVAGRAQTLAAALNHSALNIANACGALLGGVVISAGYSYSAPALAGA
ALGCAAIIIWIPAHITRSKQERKQHS

Sequences:

>Translated_426_residues
MGDAHQGNMQTLLRYLVVLVNHLNKRKPVPRQTEITHRHRLIAMLALALGGFGIGVTEFVSMGLLSLIAEDFNVAESTAG
HVITAYAMGVVVGAPVITAFTGMIPRRRLLILLMIAFTIGNALTVFTTSYPVLMAARFLAGLPHGAFFSVAGLAVASMAP
EGQRGRALAFVGMGLPVATVVGVPAVQALGFATTWKAAYVVVTIIGAITLALLWTLMPHMSKMKPTSPLTELGALKNGQV
WASLLIGSVGFGGMFAVYTYISWTMTQRAGLPEALMWIVLMAYGLGMIAGNFIGGRLSDWSVEYGILTALICIVLTLVSF
YFTSAYAWIAIINFALVGLSGSMLIPSLQIRLMDVAGRAQTLAAALNHSALNIANACGALLGGVVISAGYSYSAPALAGA
ALGCAAIIIWIPAHITRSKQERKQHS
>Mature_425_residues
GDAHQGNMQTLLRYLVVLVNHLNKRKPVPRQTEITHRHRLIAMLALALGGFGIGVTEFVSMGLLSLIAEDFNVAESTAGH
VITAYAMGVVVGAPVITAFTGMIPRRRLLILLMIAFTIGNALTVFTTSYPVLMAARFLAGLPHGAFFSVAGLAVASMAPE
GQRGRALAFVGMGLPVATVVGVPAVQALGFATTWKAAYVVVTIIGAITLALLWTLMPHMSKMKPTSPLTELGALKNGQVW
ASLLIGSVGFGGMFAVYTYISWTMTQRAGLPEALMWIVLMAYGLGMIAGNFIGGRLSDWSVEYGILTALICIVLTLVSFY
FTSAYAWIAIINFALVGLSGSMLIPSLQIRLMDVAGRAQTLAAALNHSALNIANACGALLGGVVISAGYSYSAPALAGAA
LGCAAIIIWIPAHITRSKQERKQHS

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=379, Percent_Identity=36.1477572559367, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786595, Length=384, Percent_Identity=30.46875, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787808, Length=166, Percent_Identity=31.3253012048193, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693198, Length=364, Percent_Identity=24.1758241758242, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44975; Mature: 44844

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDAHQGNMQTLLRYLVVLVNHLNKRKPVPRQTEITHRHRLIAMLALALGGFGIGVTEFV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SMGLLSLIAEDFNVAESTAGHVITAYAMGVVVGAPVITAFTGMIPRRRLLILLMIAFTIG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
NALTVFTTSYPVLMAARFLAGLPHGAFFSVAGLAVASMAPEGQRGRALAFVGMGLPVATV
CEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHH
VGVPAVQALGFATTWKAAYVVVTIIGAITLALLWTLMPHMSKMKPTSPLTELGALKNGQV
HCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHH
WASLLIGSVGFGGMFAVYTYISWTMTQRAGLPEALMWIVLMAYGLGMIAGNFIGGRLSDW
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SVEYGILTALICIVLTLVSFYFTSAYAWIAIINFALVGLSGSMLIPSLQIRLMDVAGRAQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCHHH
TLAAALNHSALNIANACGALLGGVVISAGYSYSAPALAGAALGCAAIIIWIPAHITRSKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
ERKQHS
HHHCCC
>Mature Secondary Structure 
GDAHQGNMQTLLRYLVVLVNHLNKRKPVPRQTEITHRHRLIAMLALALGGFGIGVTEFV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SMGLLSLIAEDFNVAESTAGHVITAYAMGVVVGAPVITAFTGMIPRRRLLILLMIAFTIG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
NALTVFTTSYPVLMAARFLAGLPHGAFFSVAGLAVASMAPEGQRGRALAFVGMGLPVATV
CEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHH
VGVPAVQALGFATTWKAAYVVVTIIGAITLALLWTLMPHMSKMKPTSPLTELGALKNGQV
HCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHH
WASLLIGSVGFGGMFAVYTYISWTMTQRAGLPEALMWIVLMAYGLGMIAGNFIGGRLSDW
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SVEYGILTALICIVLTLVSFYFTSAYAWIAIINFALVGLSGSMLIPSLQIRLMDVAGRAQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCHHH
TLAAALNHSALNIANACGALLGGVVISAGYSYSAPALAGAALGCAAIIIWIPAHITRSKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
ERKQHS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]