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The map label for this gene is ccsB [H]

Identifier: 38233027

GI number: 38233027

Start: 379597

End: 381189

Strand: Direct

Name: ccsB [H]

Synonym: DIP0413

Alternate gene names: 38233027

Gene position: 379597-381189 (Clockwise)

Preceding gene: 38233026

Following gene: 38233028

Centisome position: 15.25

GC content: 51.29

Gene sequence:

>1593_bases
ATGGTGCGTTATTTAAAAAAGGCTTGGCATTGGCTGACCAGTATGCGTACGGCTCTTGCCCTGTTATTCATTTTGGCGGT
TGCCGCTATCCCTGGGGCTTTGTTGCCTCAGCGGTCGCTCAATGAGTCAAAAGTTATTGAGTACATTCAAAACAACGGCA
AGATTGCGGAGATCTACGACAAGCTTCAGCTTTTCGACGTTTTCAGCTCGACGTGGTTCAACGCTATCTTTGGGTTGCTG
TTTCTTTCGCTTATTGGCTGTATCATTCCGCGTTCGTGGGATCACTACAAAGCTATGAAGACGCAGCCGGTCCGAGCACC
TAAAAACTTGGATCGCTTGCCAATGCACGGGGTGGGGAGCGTCGATAAGCCTATCGACGAAATCGACATCCGTAGCCACT
TCAAAGGCTGGCACGTGGCGGAATACTCCGCGGACCAGGACCGTGCTGGCGCTGTTTCGTTTTCTGCCGAGCGCGGCTAT
CTGCGTGAGTTTTTCAACCTGACTTTTCACCTCGGCTTGGTGGGAATGCTGGCTGCCATCGCGGTGGGCAAGATGTTCTC
CTATGAGGGGCAAGTCATTATTGTTACTGGCGATGAAAAGAGCACCGAGTTCTGTAACACGGCTACCGCTAACTATGATT
CTTTCCGTGCTGGGCCTGTTTTCGATGGCACTGGGTTGAATCCGTTTTGTTTTGTGGCGCATGATTTTACGGCTGATTAT
TTGCCGAATGGTCAAGCTAAGATGTTTAGCTCGAATGTGTCGTATGCGCAGGGTGATCGAATTTTCGATGATGTTTCTAC
GTGGGATGACTATTCGCTGCGTGTGAATCATCCGCTGCGTATTGCTGGCGACCGCGTTTATTTGCAGGGGCATGGTTATG
CGCCGACGTTTAGCATTCAGTGGCCTAATGGTGAAAAGCGTACGCAGACTGTGCAGTGGCAGCCAACGGATCCGACTTTC
TTCTTGTCTGATGGCGTGGTGCGTTTTGATCCACCGGCGGGTATGAATGACTCGGTTTATGACCGTCGCCAGCACCAGCT
TGCTATTCAGGGTCTTTTTGCCCCGACTGCTTCGTGGGAGGGGGAGAACCATGAATTATTAACGTCGCGGTTCCCTGCGA
TGACGGATCCGGCTGTTGCTATCGACGTTTACCGTGGTGATAATGGTCTTGATTCCGGTAAGGGGCAGAACCTCTTCAAG
TTGGATACCTCACTTGTGCATTCGGGACAGTTGCAGCGATTGGAGCGGGTTAACCTCACAAAGGGGGAGTCGGTCACACT
TGATGATGGCACCGTTGTGACATTTGAGGGTGCTGAGGAGTTTGCGAATTATCAGATCAGTCATGATCCCACGCAGGTAT
GGACTCTTTTGTTCTCGATTATTACTTTGGGCTCGCTTGCAGGTTCCTTGGTGATTAAGCGTCGTCGTATTTGGGTGCGT
TTGCGTCCGGTAAGCCCATCGGTTACCCAAATTGAGACGGGTGGTTTGGCGCGTACCGACCGTGCAGGTTGGGGCGAGGA
ATATGACAGAATTCACCGTGAAATTCTCGGATTGCCGGATCCAGAGTATTCTGATCCGGAGCTAGGGAGATAA

Upstream 100 bases:

>100_bases
TGGTGGGGCTGGCGTTGGTGTCTGGGCAGTGGGCTCATTTTATTAACTGGGTACGTCAATGGACCGTCGAGTACGGTGCC
ACGTTGATTTAAAAGGAATC

Downstream 100 bases:

>100_bases
GAGGTGCTATGAACGTCAACTCGAACCTTGCGCAGCTATCAGATATGGCTTTCGCATCGAGCTTCGTTATTTACTTCATC
GCGTTGGTGTTATCCATCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MVRYLKKAWHWLTSMRTALALLFILAVAAIPGALLPQRSLNESKVIEYIQNNGKIAEIYDKLQLFDVFSSTWFNAIFGLL
FLSLIGCIIPRSWDHYKAMKTQPVRAPKNLDRLPMHGVGSVDKPIDEIDIRSHFKGWHVAEYSADQDRAGAVSFSAERGY
LREFFNLTFHLGLVGMLAAIAVGKMFSYEGQVIIVTGDEKSTEFCNTATANYDSFRAGPVFDGTGLNPFCFVAHDFTADY
LPNGQAKMFSSNVSYAQGDRIFDDVSTWDDYSLRVNHPLRIAGDRVYLQGHGYAPTFSIQWPNGEKRTQTVQWQPTDPTF
FLSDGVVRFDPPAGMNDSVYDRRQHQLAIQGLFAPTASWEGENHELLTSRFPAMTDPAVAIDVYRGDNGLDSGKGQNLFK
LDTSLVHSGQLQRLERVNLTKGESVTLDDGTVVTFEGAEEFANYQISHDPTQVWTLLFSIITLGSLAGSLVIKRRRIWVR
LRPVSPSVTQIETGGLARTDRAGWGEEYDRIHREILGLPDPEYSDPELGR

Sequences:

>Translated_530_residues
MVRYLKKAWHWLTSMRTALALLFILAVAAIPGALLPQRSLNESKVIEYIQNNGKIAEIYDKLQLFDVFSSTWFNAIFGLL
FLSLIGCIIPRSWDHYKAMKTQPVRAPKNLDRLPMHGVGSVDKPIDEIDIRSHFKGWHVAEYSADQDRAGAVSFSAERGY
LREFFNLTFHLGLVGMLAAIAVGKMFSYEGQVIIVTGDEKSTEFCNTATANYDSFRAGPVFDGTGLNPFCFVAHDFTADY
LPNGQAKMFSSNVSYAQGDRIFDDVSTWDDYSLRVNHPLRIAGDRVYLQGHGYAPTFSIQWPNGEKRTQTVQWQPTDPTF
FLSDGVVRFDPPAGMNDSVYDRRQHQLAIQGLFAPTASWEGENHELLTSRFPAMTDPAVAIDVYRGDNGLDSGKGQNLFK
LDTSLVHSGQLQRLERVNLTKGESVTLDDGTVVTFEGAEEFANYQISHDPTQVWTLLFSIITLGSLAGSLVIKRRRIWVR
LRPVSPSVTQIETGGLARTDRAGWGEEYDRIHREILGLPDPEYSDPELGR
>Mature_530_residues
MVRYLKKAWHWLTSMRTALALLFILAVAAIPGALLPQRSLNESKVIEYIQNNGKIAEIYDKLQLFDVFSSTWFNAIFGLL
FLSLIGCIIPRSWDHYKAMKTQPVRAPKNLDRLPMHGVGSVDKPIDEIDIRSHFKGWHVAEYSADQDRAGAVSFSAERGY
LREFFNLTFHLGLVGMLAAIAVGKMFSYEGQVIIVTGDEKSTEFCNTATANYDSFRAGPVFDGTGLNPFCFVAHDFTADY
LPNGQAKMFSSNVSYAQGDRIFDDVSTWDDYSLRVNHPLRIAGDRVYLQGHGYAPTFSIQWPNGEKRTQTVQWQPTDPTF
FLSDGVVRFDPPAGMNDSVYDRRQHQLAIQGLFAPTASWEGENHELLTSRFPAMTDPAVAIDVYRGDNGLDSGKGQNLFK
LDTSLVHSGQLQRLERVNLTKGESVTLDDGTVVTFEGAEEFANYQISHDPTQVWTLLFSIITLGSLAGSLVIKRRRIWVR
LRPVSPSVTQIETGGLARTDRAGWGEEYDRIHREILGLPDPEYSDPELGR

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 59450; Mature: 59450

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRYLKKAWHWLTSMRTALALLFILAVAAIPGALLPQRSLNESKVIEYIQNNGKIAEIYD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEHHHH
KLQLFDVFSSTWFNAIFGLLFLSLIGCIIPRSWDHYKAMKTQPVRAPKNLDRLPMHGVGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
VDKPIDEIDIRSHFKGWHVAEYSADQDRAGAVSFSAERGYLREFFNLTFHLGLVGMLAAI
CCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
AVGKMFSYEGQVIIVTGDEKSTEFCNTATANYDSFRAGPVFDGTGLNPFCFVAHDFTADY
HHHHHCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
LPNGQAKMFSSNVSYAQGDRIFDDVSTWDDYSLRVNHPLRIAGDRVYLQGHGYAPTFSIQ
CCCCCCEEEECCCCHHCCCCHHHHHCCCCCCEEEECCCEEEECCEEEEEECCCCCEEEEE
WPNGEKRTQTVQWQPTDPTFFLSDGVVRFDPPAGMNDSVYDRRQHQLAIQGLFAPTASWE
CCCCCCCCEEEEECCCCCCEEECCCEEEECCCCCCCCHHHHHHHHHHHHHEEECCCCCCC
GENHELLTSRFPAMTDPAVAIDVYRGDNGLDSGKGQNLFKLDTSLVHSGQLQRLERVNLT
CCCCHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECHHHHCCHHHHHHHHCCCC
KGESVTLDDGTVVTFEGAEEFANYQISHDPTQVWTLLFSIITLGSLAGSLVIKRRRIWVR
CCCEEEECCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
LRPVSPSVTQIETGGLARTDRAGWGEEYDRIHREILGLPDPEYSDPELGR
EECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVRYLKKAWHWLTSMRTALALLFILAVAAIPGALLPQRSLNESKVIEYIQNNGKIAEIYD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEHHHH
KLQLFDVFSSTWFNAIFGLLFLSLIGCIIPRSWDHYKAMKTQPVRAPKNLDRLPMHGVGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
VDKPIDEIDIRSHFKGWHVAEYSADQDRAGAVSFSAERGYLREFFNLTFHLGLVGMLAAI
CCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
AVGKMFSYEGQVIIVTGDEKSTEFCNTATANYDSFRAGPVFDGTGLNPFCFVAHDFTADY
HHHHHCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
LPNGQAKMFSSNVSYAQGDRIFDDVSTWDDYSLRVNHPLRIAGDRVYLQGHGYAPTFSIQ
CCCCCCEEEECCCCHHCCCCHHHHHCCCCCCEEEECCCEEEECCEEEEEECCCCCEEEEE
WPNGEKRTQTVQWQPTDPTFFLSDGVVRFDPPAGMNDSVYDRRQHQLAIQGLFAPTASWE
CCCCCCCCEEEEECCCCCCEEECCCEEEECCCCCCCCHHHHHHHHHHHHHEEECCCCCCC
GENHELLTSRFPAMTDPAVAIDVYRGDNGLDSGKGQNLFKLDTSLVHSGQLQRLERVNLT
CCCCHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECHHHHCCHHHHHHHHCCCC
KGESVTLDDGTVVTFEGAEEFANYQISHDPTQVWTLLFSIITLGSLAGSLVIKRRRIWVR
CCCEEEECCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
LRPVSPSVTQIETGGLARTDRAGWGEEYDRIHREILGLPDPEYSDPELGR
EECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA