Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 38232993

GI number: 38232993

Start: 343881

End: 344369

Strand: Direct

Name: deoC [H]

Synonym: DIP0377

Alternate gene names: 38232993

Gene position: 343881-344369 (Clockwise)

Preceding gene: 38232992

Following gene: 38232998

Centisome position: 13.82

GC content: 61.35

Gene sequence:

>489_bases
GTGATTCCTATAGTCAGTGGCCCCGAAGCGAGCGTGGATAAGGCGCGTGAACTCGCTGCCGGCGGTGAGGGCGTATGCGT
TCCGCCAACATTATTAACTGCCCTTGGTCAGGTGCCAGGCCCTGTGGTGTCGTGGGCGGGCTATCCCACTGGCCAGCACC
ACAGCCTGATCAAGGCCTCAGAGGCGCGTCTAGCGGTGCAATGCGGTGCCGGCATGGTGCTCGTGGTTCCTGACCCCGCC
GCGGTTGTCGCTGGCACCAGCACGGCGTTGATTACGGAGCTGGTTACTACTCGTGAGGCGGTGCCGCATCCTGCATCGCT
GGCGTTGGTCCTCGATACGGATCTGTTTGCCGCTGATGTTATTGCGCGTACTGCCGAGCACGCGCAAGCAGCTGGTTTTG
ACGCGGTGGTAGTGAAAAAAGAAACCCCGCAGTTAGCCTTGCCCACCTATGTGTGGGATGAGGCCAATGCGGGGCTGTTG
GTGCGCTAG

Upstream 100 bases:

>100_bases
TTTATCGTGGATCGGCATCGTCATCATTGGCCTGTACTGGTTTGATGTGCGTCCACAGATTACGAACATCCTCAACGGCA
ACTACGGCTGGTAGAGCGCT

Downstream 100 bases:

>100_bases
TTTTCTAGCTCGGCGAGGTTGACGTTGTTGCCGTTGAGCGTGAGGTTCATGCCACCCTCAATAACATCAACGTTGCTGAT
CGTCATGTTGTGGAGGCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MIPIVSGPEASVDKARELAAGGEGVCVPPTLLTALGQVPGPVVSWAGYPTGQHHSLIKASEARLAVQCGAGMVLVVPDPA
AVVAGTSTALITELVTTREAVPHPASLALVLDTDLFAADVIARTAEHAQAAGFDAVVVKKETPQLALPTYVWDEANAGLL
VR

Sequences:

>Translated_162_residues
MIPIVSGPEASVDKARELAAGGEGVCVPPTLLTALGQVPGPVVSWAGYPTGQHHSLIKASEARLAVQCGAGMVLVVPDPA
AVVAGTSTALITELVTTREAVPHPASLALVLDTDLFAADVIARTAEHAQAAGFDAVVVKKETPQLALPTYVWDEANAGLL
VR
>Mature_162_residues
MIPIVSGPEASVDKARELAAGGEGVCVPPTLLTALGQVPGPVVSWAGYPTGQHHSLIKASEARLAVQCGAGMVLVVPDPA
AVVAGTSTALITELVTTREAVPHPASLALVLDTDLFAADVIARTAEHAQAAGFDAVVVKKETPQLALPTYVWDEANAGLL
VR

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 16532; Mature: 16532

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPIVSGPEASVDKARELAAGGEGVCVPPTLLTALGQVPGPVVSWAGYPTGQHHSLIKAS
CCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHCCCCCCEEECCCCCCCCCCCEEECC
EARLAVQCGAGMVLVVPDPAAVVAGTSTALITELVTTREAVPHPASLALVLDTDLFAADV
CCEEEEECCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHH
IARTAEHAQAAGFDAVVVKKETPQLALPTYVWDEANAGLLVR
HHHHHHHHHHCCCEEEEEECCCCCEECCEEEECCCCCCEEEC
>Mature Secondary Structure
MIPIVSGPEASVDKARELAAGGEGVCVPPTLLTALGQVPGPVVSWAGYPTGQHHSLIKAS
CCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHCCCCCCEEECCCCCCCCCCCEEECC
EARLAVQCGAGMVLVVPDPAAVVAGTSTALITELVTTREAVPHPASLALVLDTDLFAADV
CCEEEEECCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHH
IARTAEHAQAAGFDAVVVKKETPQLALPTYVWDEANAGLLVR
HHHHHHHHHHCCCEEEEEECCCCCEECCEEEECCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA