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The map label for this gene is oppD [H]

Identifier: 38232942

GI number: 38232942

Start: 286029

End: 286646

Strand: Direct

Name: oppD [H]

Synonym: DIP0321

Alternate gene names: 38232942

Gene position: 286029-286646 (Clockwise)

Preceding gene: 38232941

Following gene: 38232943

Centisome position: 11.49

GC content: 60.68

Gene sequence:

>618_bases
ATGGAAGCCCCGATAGTGAGTATGCGGGACGTGACCATCGAAACGGATGGCGGCGTCCGTCTTGTCCACGTCGACGAGCT
CGACATCTTTCGTGGCGACACCATTGCGATCACCGGCCGTAGCGGCTCTGGAAAAACCATGCTGCTACGAGCGTTATGCG
GTGCGCACACAGCGGGCATTACTGTGCGCGGAAGCATTCAGCGTGCGCAGCGAGCAGCGTTGATTATGCAGGATTCCTTG
GGGTCGCTTAATCCGCTGGTGCGTTGTGAAAAACAGGTGCGATTGATGGCAGGGGATCCACACGCGGCTCGGCAAGCGCT
AGCGGACTGCGGAATCACCCCTGAACTGGCACGTCGTTATCCACTGGAGCTTTCGGGTGGGCAGCGGCAGCGTGTGGCTA
TCGCAGGGGCGATTGCCTCTAACCCTAAGCTTTTGCTTGCCGACGAACCCACCTCCGCACTGGATCCCGTAGCAACGCTG
GCGGTGGTCGATGCGCTACGAGCTTTCCAGAGTGCTACGGGCGGTGCCGTGGCGATCTCAACACACTCGATGGGAGTGGC
GCGCCGCCTAGGCAGCCGACGCTTCCATGTTGCCGAGGGGAAGGTGACCCAACTATGA

Upstream 100 bases:

>100_bases
TCTAGGGGAAAGAACATAGTGTGCGCTAAGCTTATCCTTCACTGCCTGTTGAAAAACGAATCATATTCAATAGAAAAGAG
CGCCCCCCTAGGAGAACACC

Downstream 100 bases:

>100_bases
GCACATCTGCACTCATCGAGTTTCACGGTGCTAGCGTGGCAGGGCGCGTGACAAACCTGAGTTTTAGCGTTCACACTGGT
GACAAACTCGGTGTGATCGG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEAPIVSMRDVTIETDGGVRLVHVDELDIFRGDTIAITGRSGSGKTMLLRALCGAHTAGITVRGSIQRAQRAALIMQDSL
GSLNPLVRCEKQVRLMAGDPHAARQALADCGITPELARRYPLELSGGQRQRVAIAGAIASNPKLLLADEPTSALDPVATL
AVVDALRAFQSATGGAVAISTHSMGVARRLGSRRFHVAEGKVTQL

Sequences:

>Translated_205_residues
MEAPIVSMRDVTIETDGGVRLVHVDELDIFRGDTIAITGRSGSGKTMLLRALCGAHTAGITVRGSIQRAQRAALIMQDSL
GSLNPLVRCEKQVRLMAGDPHAARQALADCGITPELARRYPLELSGGQRQRVAIAGAIASNPKLLLADEPTSALDPVATL
AVVDALRAFQSATGGAVAISTHSMGVARRLGSRRFHVAEGKVTQL
>Mature_205_residues
MEAPIVSMRDVTIETDGGVRLVHVDELDIFRGDTIAITGRSGSGKTMLLRALCGAHTAGITVRGSIQRAQRAALIMQDSL
GSLNPLVRCEKQVRLMAGDPHAARQALADCGITPELARRYPLELSGGQRQRVAIAGAIASNPKLLLADEPTSALDPVATL
AVVDALRAFQSATGGAVAISTHSMGVARRLGSRRFHVAEGKVTQL

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG4172

COG function: function code R; ABC-type uncharacterized transport system, duplicated ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787758, Length=226, Percent_Identity=31.858407079646, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787029, Length=207, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1788506, Length=200, Percent_Identity=35, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=31.6831683168317, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI145693107, Length=211, Percent_Identity=33.6492890995261, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787759, Length=238, Percent_Identity=31.0924369747899, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI48994883, Length=213, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1788225, Length=212, Percent_Identity=32.5471698113208, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=31.8627450980392, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786872, Length=187, Percent_Identity=32.620320855615, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=201, Percent_Identity=32.8358208955224, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1789890, Length=219, Percent_Identity=29.2237442922374, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788644, Length=104, Percent_Identity=42.3076923076923, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786398, Length=71, Percent_Identity=52.112676056338, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787164, Length=185, Percent_Identity=34.5945945945946, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=31.3084112149533, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789962, Length=190, Percent_Identity=28.9473684210526, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=191, Percent_Identity=31.413612565445, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1790544, Length=213, Percent_Identity=30.5164319248826, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1789963, Length=204, Percent_Identity=30.8823529411765, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787548, Length=220, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788450, Length=100, Percent_Identity=38, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787547, Length=192, Percent_Identity=27.6041666666667, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1789032, Length=200, Percent_Identity=31, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786563, Length=172, Percent_Identity=34.8837209302326, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786703, Length=186, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789873, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=31.9796954314721, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=28.7610619469027, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=193, Percent_Identity=31.6062176165803, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24666836, Length=193, Percent_Identity=32.1243523316062, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 21581; Mature: 21581

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAPIVSMRDVTIETDGGVRLVHVDELDIFRGDTIAITGRSGSGKTMLLRALCGAHTAGI
CCCCCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCE
TVRGSIQRAQRAALIMQDSLGSLNPLVRCEKQVRLMAGDPHAARQALADCGITPELARRY
EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCHHHHHHHHHCCCCHHHHHCC
PLELSGGQRQRVAIAGAIASNPKLLLADEPTSALDPVATLAVVDALRAFQSATGGAVAIS
CCCCCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
THSMGVARRLGSRRFHVAEGKVTQL
ECHHHHHHHHCCCEEEEECCCEECC
>Mature Secondary Structure
MEAPIVSMRDVTIETDGGVRLVHVDELDIFRGDTIAITGRSGSGKTMLLRALCGAHTAGI
CCCCCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCE
TVRGSIQRAQRAALIMQDSLGSLNPLVRCEKQVRLMAGDPHAARQALADCGITPELARRY
EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCHHHHHHHHHCCCCHHHHHCC
PLELSGGQRQRVAIAGAIASNPKLLLADEPTSALDPVATLAVVDALRAFQSATGGAVAIS
CCCCCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
THSMGVARRLGSRRFHVAEGKVTQL
ECHHHHHHHHCCCEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]