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The map label for this gene is cspA [H]

Identifier: 38232941

GI number: 38232941

Start: 285652

End: 285855

Strand: Direct

Name: cspA [H]

Synonym: DIP0320

Alternate gene names: 38232941

Gene position: 285652-285855 (Clockwise)

Preceding gene: 38232939

Following gene: 38232942

Centisome position: 11.48

GC content: 58.33

Gene sequence:

>204_bases
ATGGCACAGGGAACTGTGAAGTGGTTCAACGCTGAAAAAGGTTTCGGCTTCATCGCTCCGGAGGACGGCTCCGCTGACGT
CTTCGTCCACTACTCCGAGATCCAGGGCAACGGCTTCCGTACCCTCGAAGAGAACCAGAAGGTTGAGTTCGAGGTCGGCG
AGGGTGCCAAGGGTCCTCAGGCGCAGCAGGTTCGCGCTATCTAA

Upstream 100 bases:

>100_bases
TTGCTATTAAGAAGCCTCGTCGTGTTTCCGAAGTGTGAGGATGAACGGCTCCCACTGCAATTCGGTATTCACCGATAGTT
CTAGAAGTTAGGTTTTTGTT

Downstream 100 bases:

>100_bases
TTAGCTCGTTCCCGCTAGCTACAAGAGGTCTTAACGTCCAACATTGATTGGAGGTTAAGACCTTTTTGTCATATCTAGGG
GAAAGAACATAGTGTGCGCT

Product: cold-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAKGPQAQQVRAI

Sequences:

>Translated_67_residues
MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAKGPQAQQVRAI
>Mature_66_residues
AQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAKGPQAQQVRAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=67.6923076923077, Blast_Score=96, Evalue=6e-22,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=64.0625, Blast_Score=92, Evalue=4e-21,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=67.6923076923077, Blast_Score=92, Evalue=5e-21,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=60.9375, Blast_Score=90, Evalue=2e-20,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=65.625, Blast_Score=90, Evalue=2e-20,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=65.5737704918033, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=53.7313432835821, Blast_Score=80, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=49.2063492063492, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7347; Mature: 7216

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAKGPQ
CCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCCCC
AQQVRAI
CCEEECC
>Mature Secondary Structure 
AQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAKGPQ
CCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCCCC
AQQVRAI
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]