| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is ydfJ [H]
Identifier: 38232873
GI number: 38232873
Start: 211613
End: 213949
Strand: Direct
Name: ydfJ [H]
Synonym: DIP0250
Alternate gene names: 38232873
Gene position: 211613-213949 (Clockwise)
Preceding gene: 38232872
Following gene: 38232874
Centisome position: 8.5
GC content: 57.12
Gene sequence:
>2337_bases GTGGCCGCCTTTTTGTATCGTGTTGGCGCGTGGTCGTTTCGGGCCAAGTGGTTTGTGATTGTCACGTGGCTTGTTGTGCT TGCGGCTGTAGGCGGTGCTGCCGCTGCGTTTCAAGCGGGCTTTAATGATCTATTTACGATCAATAACACTCCGGCGAAGA CGGCGACGGAGATTTATCTGGAAAACTTCCCTGAACAGCGCAATCCGTTGAAGAGTACGGGTGTGAATATCGTGTTTAAA GCGCCGGAGGGGCACACGCTGGCTGAGCCGGAGAACAAGGCTGCCATGGATAGTGTGGTGCAGGCGATCCAAGATAATCT TGAGGGCCTGACTAATACGCAGCGTTTTGGTAATCCTGTGGAATTGAATCCGAAGTTGCAGCAGGGTGTTATCGATTTGA TGACGCAGCGTGGTGTGCCGGAGGAAAACGCGCGTGCCGACGCAGCCAATTTGAGCCTGATTACCCCCGATGAGACGATC GGGTACACCACCTTCGATATTGATGTGCCTATGCCTGCGGACGTCAGCGATGCGCAGCGCCAGGCGATCACCGATGCCAT GAACTTAGGCCGCGAGAAGGGCCTGACAGTTGAGGCCGGTGGTGCTGGTTTTGGTGATCCGATCGTGATTGAAGAAACTT CAGAGATCATTGGTGTGGCCATCGCGGCGATCATTTTGATCTTCACATTTGGTTCCTTGGTGGCCGCTGGACTCCCACTG CTCATTGCTGTTATCGGTGTAGGTATTGGTTCGCTATCGATCACGCTGGCTACGGCATGGGTATCGCTGAATAACGTCAC CCCAGTGCTGGCGGTGATGTTGGGCCTGGCGGTGGGTATCGACTACTCACTGTTTATCATGTTCCGCTACCGCCGCGAGC TGCTGCACCTAGACAAGGAACAAGCCGCCGGCATGGCGGTGGGCACTGCGGGATCTGCGGTGGTGTTCGCGGGCCTGACG GTGATCATCGCGCTGGTTGCTTTGGCAGTGGCTAATATTCCATTCCTGACTTACATGGGGCTTGCTGCAGCGTTCACGGT GTTCATTGCGGTGCTGATCGCACTGACGATGGTGCCGGCGCTGTTGGGGGCGTTGGGGGATAAGGCCTTTGCGGTGCGGT TGCGCCGGAAGCGGCGGACGTCGCCAGCCCGTACGTTGGGGCGCAAGTGGGGGGAGTTGGTGCACCGCGCGCCGGGTGTG GTGATTGCGGTGAGCGTCGTAACGCTGGGTGCATTGACGCTGCCTGCGCTGCAATTGCACTTGTCGTTACCCTCCGATAC GCAGGCGAGTTATAGCTCTACGCAGCGCAAACAGGCTGAGATCATGGCGGAGGGGTTTGGCCCTGGTATTAATTCGCCAT TTTTGGTGGTGGCGGATGCGCATTCGGTGGATGAGAACGCGGAGATTTTGGAGCCGCTGATCCGCGCGCAGAATCCGGCG CCGGGGGAGCGCAAGCAGGCGGCAGCGAATGCGGCGTATCAGTACATTATTCAGAAGTATTCGGTTACTCCGGATGTGAA GCATGTGCAGATCGTGGGATTGTCGAAGGACGGCTTGGCGGCGCAGTTGTTGCTTACGCCGGAGTCGTCGCCAGAAGACG ATGTGACCAAGCAGCTTATCGACGCCCTCCTGATCAAACAGGACGAGGTGAACAACGCGACCGGTATTCGTTCCGGTATT ACGGGCCTGATCCCCGTGCAGCAGGATGTGACCAACCGTCTGGCGGGCGTGATGCCGCTATACCTTGGCATAGTGGTGGG CCTTGCGGTGTTATTGCTGATGATCGTGTTCCGCAGCATTTGGGTGCCGGTGGTCGCTGGCGTGGGCTTTTTGCTCTCTG TGGGCGCGGCGTTCGGCGTGACTGTGCTGTTTTGGCAAGAGGGTCTGTGGGGGCTTGTGGACACTCCCAGCCCGATCATT GCGTTTATGCCGATCTTCCTTATTGGCGTGTGCTTTGGCCTTGCTATGGACTATCAGGTGTTCTTGGTATCCGCGATGCG GGAGCGTTTCGTGCATGGGCGTATCGACGCCACCAGCCGCTACAACGCCATCGAAGAATCGATCGTAGAGGGCTTCGCCT CAAGTGTTCGTGTGGTCACTGCTGCCGCGCTGATCATGATTGCGGTGTTTGTGGCCTTCATTGGGCAGCCGATTCCGTTT ATTAAAATCTTCGGTTTTGCCTTGGGCGCTGGGGTACTTTTCGACGCCTTCTTTATCCGCATGGCGTTCGTTCCGGCAGC AATGTTCCTTCTTGGACGGCAAACGTGGTACATGCCACATTGGCTGGATAAAGTGCTGCCTCGTCTCGATGTAGAGGGCA CGTCGCTGGAGCGTTAA
Upstream 100 bases:
>100_bases CCCCGCGAACCCGCGGAGCCCCCAAAACCAGCAAATCCTAATCAAGGTCTACACTGGAAGACTATTTCTCGTTCCCTTGT GGTTTAAGGAGATCATCGTC
Downstream 100 bases:
>100_bases CCGAGATCGCAGGCGCTGTGGCATGGGCTGTAGGTAGCTGAGAACTAGCCCGCCAAGCCATCGGTGCCCGCATGAGGGGC AAGATCTTTTCCTCGTCACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 778; Mature: 777
Protein sequence:
>778_residues MAAFLYRVGAWSFRAKWFVIVTWLVVLAAVGGAAAAFQAGFNDLFTINNTPAKTATEIYLENFPEQRNPLKSTGVNIVFK APEGHTLAEPENKAAMDSVVQAIQDNLEGLTNTQRFGNPVELNPKLQQGVIDLMTQRGVPEENARADAANLSLITPDETI GYTTFDIDVPMPADVSDAQRQAITDAMNLGREKGLTVEAGGAGFGDPIVIEETSEIIGVAIAAIILIFTFGSLVAAGLPL LIAVIGVGIGSLSITLATAWVSLNNVTPVLAVMLGLAVGIDYSLFIMFRYRRELLHLDKEQAAGMAVGTAGSAVVFAGLT VIIALVALAVANIPFLTYMGLAAAFTVFIAVLIALTMVPALLGALGDKAFAVRLRRKRRTSPARTLGRKWGELVHRAPGV VIAVSVVTLGALTLPALQLHLSLPSDTQASYSSTQRKQAEIMAEGFGPGINSPFLVVADAHSVDENAEILEPLIRAQNPA PGERKQAAANAAYQYIIQKYSVTPDVKHVQIVGLSKDGLAAQLLLTPESSPEDDVTKQLIDALLIKQDEVNNATGIRSGI TGLIPVQQDVTNRLAGVMPLYLGIVVGLAVLLLMIVFRSIWVPVVAGVGFLLSVGAAFGVTVLFWQEGLWGLVDTPSPII AFMPIFLIGVCFGLAMDYQVFLVSAMRERFVHGRIDATSRYNAIEESIVEGFASSVRVVTAAALIMIAVFVAFIGQPIPF IKIFGFALGAGVLFDAFFIRMAFVPAAMFLLGRQTWYMPHWLDKVLPRLDVEGTSLER
Sequences:
>Translated_778_residues MAAFLYRVGAWSFRAKWFVIVTWLVVLAAVGGAAAAFQAGFNDLFTINNTPAKTATEIYLENFPEQRNPLKSTGVNIVFK APEGHTLAEPENKAAMDSVVQAIQDNLEGLTNTQRFGNPVELNPKLQQGVIDLMTQRGVPEENARADAANLSLITPDETI GYTTFDIDVPMPADVSDAQRQAITDAMNLGREKGLTVEAGGAGFGDPIVIEETSEIIGVAIAAIILIFTFGSLVAAGLPL LIAVIGVGIGSLSITLATAWVSLNNVTPVLAVMLGLAVGIDYSLFIMFRYRRELLHLDKEQAAGMAVGTAGSAVVFAGLT VIIALVALAVANIPFLTYMGLAAAFTVFIAVLIALTMVPALLGALGDKAFAVRLRRKRRTSPARTLGRKWGELVHRAPGV VIAVSVVTLGALTLPALQLHLSLPSDTQASYSSTQRKQAEIMAEGFGPGINSPFLVVADAHSVDENAEILEPLIRAQNPA PGERKQAAANAAYQYIIQKYSVTPDVKHVQIVGLSKDGLAAQLLLTPESSPEDDVTKQLIDALLIKQDEVNNATGIRSGI TGLIPVQQDVTNRLAGVMPLYLGIVVGLAVLLLMIVFRSIWVPVVAGVGFLLSVGAAFGVTVLFWQEGLWGLVDTPSPII AFMPIFLIGVCFGLAMDYQVFLVSAMRERFVHGRIDATSRYNAIEESIVEGFASSVRVVTAAALIMIAVFVAFIGQPIPF IKIFGFALGAGVLFDAFFIRMAFVPAAMFLLGRQTWYMPHWLDKVLPRLDVEGTSLER >Mature_777_residues AAFLYRVGAWSFRAKWFVIVTWLVVLAAVGGAAAAFQAGFNDLFTINNTPAKTATEIYLENFPEQRNPLKSTGVNIVFKA PEGHTLAEPENKAAMDSVVQAIQDNLEGLTNTQRFGNPVELNPKLQQGVIDLMTQRGVPEENARADAANLSLITPDETIG YTTFDIDVPMPADVSDAQRQAITDAMNLGREKGLTVEAGGAGFGDPIVIEETSEIIGVAIAAIILIFTFGSLVAAGLPLL IAVIGVGIGSLSITLATAWVSLNNVTPVLAVMLGLAVGIDYSLFIMFRYRRELLHLDKEQAAGMAVGTAGSAVVFAGLTV IIALVALAVANIPFLTYMGLAAAFTVFIAVLIALTMVPALLGALGDKAFAVRLRRKRRTSPARTLGRKWGELVHRAPGVV IAVSVVTLGALTLPALQLHLSLPSDTQASYSSTQRKQAEIMAEGFGPGINSPFLVVADAHSVDENAEILEPLIRAQNPAP GERKQAAANAAYQYIIQKYSVTPDVKHVQIVGLSKDGLAAQLLLTPESSPEDDVTKQLIDALLIKQDEVNNATGIRSGIT GLIPVQQDVTNRLAGVMPLYLGIVVGLAVLLLMIVFRSIWVPVVAGVGFLLSVGAAFGVTVLFWQEGLWGLVDTPSPIIA FMPIFLIGVCFGLAMDYQVFLVSAMRERFVHGRIDATSRYNAIEESIVEGFASSVRVVTAAALIMIAVFVAFIGQPIPFI KIFGFALGAGVLFDAFFIRMAFVPAAMFLLGRQTWYMPHWLDKVLPRLDVEGTSLER
Specific function: Unknown
COG id: COG2409
COG function: function code R; Predicted drug exporters of the RND superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mmpL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004869 - InterPro: IPR000731 [H]
Pfam domain/function: PF03176 MMPL [H]
EC number: NA
Molecular weight: Translated: 83266; Mature: 83135
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFLYRVGAWSFRAKWFVIVTWLVVLAAVGGAAAAFQAGFNDLFTINNTPAKTATEIYL CCCHHEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHH ENFPEQRNPLKSTGVNIVFKAPEGHTLAEPENKAAMDSVVQAIQDNLEGLTNTQRFGNPV HHCCCCCCCHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCC ELNPKLQQGVIDLMTQRGVPEENARADAANLSLITPDETIGYTTFDIDVPMPADVSDAQR CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCHHHH QAITDAMNLGREKGLTVEAGGAGFGDPIVIEETSEIIGVAIAAIILIFTFGSLVAAGLPL HHHHHHHHCCHHCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIAVIGVGIGSLSITLATAWVSLNNVTPVLAVMLGLAVGIDYSLFIMFRYRRELLHLDKE HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH QAAGMAVGTAGSAVVFAGLTVIIALVALAVANIPFLTYMGLAAAFTVFIAVLIALTMVPA HHCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGALGDKAFAVRLRRKRRTSPARTLGRKWGELVHRAPGVVIAVSVVTLGALTLPALQLH HHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHEE LSLPSDTQASYSSTQRKQAEIMAEGFGPGINSPFLVVADAHSVDENAEILEPLIRAQNPA EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC PGERKQAAANAAYQYIIQKYSVTPDVKHVQIVGLSKDGLAAQLLLTPESSPEDDVTKQLI CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHH DALLIKQDEVNNATGIRSGITGLIPVQQDVTNRLAGVMPLYLGIVVGLAVLLLMIVFRSI HHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVPVVAGVGFLLSVGAAFGVTVLFWQEGLWGLVDTPSPIIAFMPIFLIGVCFGLAMDYQV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FLVSAMRERFVHGRIDATSRYNAIEESIVEGFASSVRVVTAAALIMIAVFVAFIGQPIPF HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH IKIFGFALGAGVLFDAFFIRMAFVPAAMFLLGRQTWYMPHWLDKVLPRLDVEGTSLER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AAFLYRVGAWSFRAKWFVIVTWLVVLAAVGGAAAAFQAGFNDLFTINNTPAKTATEIYL CCHHEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHH ENFPEQRNPLKSTGVNIVFKAPEGHTLAEPENKAAMDSVVQAIQDNLEGLTNTQRFGNPV HHCCCCCCCHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCC ELNPKLQQGVIDLMTQRGVPEENARADAANLSLITPDETIGYTTFDIDVPMPADVSDAQR CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCHHHH QAITDAMNLGREKGLTVEAGGAGFGDPIVIEETSEIIGVAIAAIILIFTFGSLVAAGLPL HHHHHHHHCCHHCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIAVIGVGIGSLSITLATAWVSLNNVTPVLAVMLGLAVGIDYSLFIMFRYRRELLHLDKE HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH QAAGMAVGTAGSAVVFAGLTVIIALVALAVANIPFLTYMGLAAAFTVFIAVLIALTMVPA HHCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGALGDKAFAVRLRRKRRTSPARTLGRKWGELVHRAPGVVIAVSVVTLGALTLPALQLH HHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHEE LSLPSDTQASYSSTQRKQAEIMAEGFGPGINSPFLVVADAHSVDENAEILEPLIRAQNPA EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC PGERKQAAANAAYQYIIQKYSVTPDVKHVQIVGLSKDGLAAQLLLTPESSPEDDVTKQLI CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHH DALLIKQDEVNNATGIRSGITGLIPVQQDVTNRLAGVMPLYLGIVVGLAVLLLMIVFRSI HHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVPVVAGVGFLLSVGAAFGVTVLFWQEGLWGLVDTPSPIIAFMPIFLIGVCFGLAMDYQV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FLVSAMRERFVHGRIDATSRYNAIEESIVEGFASSVRVVTAAALIMIAVFVAFIGQPIPF HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH IKIFGFALGAGVLFDAFFIRMAFVPAAMFLLGRQTWYMPHWLDKVLPRLDVEGTSLER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]