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The map label for this gene is ymdB [C]

Identifier: 21675028

GI number: 21675028

Start: 2086261

End: 2086779

Strand: Reverse

Name: ymdB [C]

Synonym: CT2219

Alternate gene names: 21675028

Gene position: 2086779-2086261 (Counterclockwise)

Preceding gene: 21675029

Following gene: 21675025

Centisome position: 96.84

GC content: 59.73

Gene sequence:

>519_bases
GTGCCAGATAATGTGTTGATCCATGCCATAAAGGCGGACATCACCTCGCTGACGGTCGATGCCATTGTCAATGCGGCGAA
CACTTCGCTGCTTGGCGGCGGAGGCGTTGACGGGGCGATTCACCGGGCGGCAGGGCCGAAGCTGCTCGAAGCATGCCGCG
AACTTGGAGGATGTCTCACTGGCGAAGCGAAGATCACGAAGGGCTACCGGCTGCCCGCAACGTTTGTCATCCACACCGTT
GGCCCGGTCTGGCATGGCGGCAACCACGGCGAAGCCGAACTCCTTGCCTCATGCTACCGCAACTCGCTGAAGCTCGCCAT
CGAGCACCATTGCCGTACCATCGCCTTCCCCTCCATCAGCACCGGCATCTACGGCTATCCCGTCGAACAGGCCGCTGCTA
TCGCCATCACGACAGTGCGCGAAATGCTCGCGGACGAAAGGGGTATCGAAAAGGTCATTTTCTGCTGCTTTTCAGACCGT
GATCTCGACGTTTACCAGAAGGCGCTTGCTGCCGGATGA

Upstream 100 bases:

>100_bases
GATCGATGCCGATTTTGAAGAGGTGAAGGCGGACTCGATTGATAATGGATAGTTGACAATTGATAATGCTTGTTGTCCGA
AGCATAAAAACGGGACAACT

Downstream 100 bases:

>100_bases
GGCTTTGCGCCGTCAGTATCGCCACGGGAAATAGGTATCATATATCGAATCAAATGCTGAATAAGCTGGGCATTGTCCTG
TAGCCAGCTTTTCGAAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPDNVLIHAIKADITSLTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACRELGGCLTGEAKITKGYRLPATFVIHTV
GPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSISTGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDR
DLDVYQKALAAG

Sequences:

>Translated_172_residues
MPDNVLIHAIKADITSLTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACRELGGCLTGEAKITKGYRLPATFVIHTV
GPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSISTGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDR
DLDVYQKALAAG
>Mature_171_residues
PDNVLIHAIKADITSLTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACRELGGCLTGEAKITKGYRLPATFVIHTVG
PVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSISTGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDRD
LDVYQKALAAG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=163, Percent_Identity=58.8957055214724, Blast_Score=187, Evalue=3e-48,
Organism=Homo sapiens, GI13569840, Length=168, Percent_Identity=55.3571428571429, Blast_Score=187, Evalue=4e-48,
Organism=Homo sapiens, GI207450721, Length=161, Percent_Identity=45.3416149068323, Blast_Score=121, Evalue=3e-28,
Organism=Homo sapiens, GI8923143, Length=161, Percent_Identity=45.3416149068323, Blast_Score=121, Evalue=4e-28,
Organism=Homo sapiens, GI20336746, Length=170, Percent_Identity=32.9411764705882, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI154813199, Length=176, Percent_Identity=32.3863636363636, Blast_Score=91, Evalue=4e-19,
Organism=Homo sapiens, GI93141018, Length=171, Percent_Identity=30.4093567251462, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI93141020, Length=171, Percent_Identity=30.4093567251462, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI4758496, Length=171, Percent_Identity=30.4093567251462, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI226371718, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI226371716, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI226371714, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI226371712, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI226371710, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI226371706, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=7e-15,
Organism=Escherichia coli, GI1787283, Length=167, Percent_Identity=52.0958083832335, Blast_Score=173, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17538214, Length=169, Percent_Identity=49.112426035503, Blast_Score=139, Evalue=7e-34,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=38.3561643835616, Blast_Score=90, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2219_CHLTE (Q8KAE4)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_663093.1
- ProteinModelPortal:   Q8KAE4
- SMR:   Q8KAE4
- GeneID:   1007341
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT2219
- NMPDR:   fig|194439.1.peg.2187
- TIGR:   CT2219
- HOGENOM:   HBG682503
- OMA:   ARHVIHT
- ProtClustDB:   PRK00431
- BioCyc:   CTEP194439:CT_2219-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 18200; Mature: 18069

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDNVLIHAIKADITSLTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACRELGGCLT
CCCCEEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCCCC
GEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSIS
CCEEECCCCCCCHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
TGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDRDLDVYQKALAAG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PDNVLIHAIKADITSLTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACRELGGCLT
CCCEEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCCCC
GEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSIS
CCEEECCCCCCCHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
TGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDRDLDVYQKALAAG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901