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The map label for this gene is ysgA [H]

Identifier: 21674700

GI number: 21674700

Start: 1787500

End: 1788291

Strand: Reverse

Name: ysgA [H]

Synonym: CT1888

Alternate gene names: 21674700

Gene position: 1788291-1787500 (Counterclockwise)

Preceding gene: 21674701

Following gene: 21674698

Centisome position: 82.99

GC content: 64.9

Gene sequence:

>792_bases
ATGAGGCGTGAATCCTTTCCGCCGCTGAGCAAGGCAATGCTGGGTCGTCTGGCGCGACTCGGGCAAAAGAAGCATCGCGA
CAGCGAAGGCCTGTTTCTTGCCGAGGGGTTGCGCACGGTCAGTGAGTTGCTTCAGAGTCTTTCCGATCCGTCGATGCTGC
ACGCGCTTGTGTTCGACGAAAAGGCGGCGGGCCAGCTCGATGGCCTGGAGCGTTTCGCCGGAAAGGCGTGGCTCGCCGGG
CCGAATGAGTTCAAACGTCTCGCACAGACCACCTCGCCGCAGGGCGTGGTTGCGGCGTTCCGGAAACCGGAGAGTGGCGA
GTTTCGGCCCGCATCCGCCCGTTCGTTCGTCGTGGCGCTCGACGACGTGCAGGATCCGGGCAACGTCGGCACGATCATCC
GCACGGCGGCCTGGTTCGGCGCGGAGGCGGTCATTTGCGGGCGCGGCACCGCCGATCCGTACAACGCCAAATCGGTCCGG
TCGAGTGCGGGCAGCATCTTCGCGCTCGCAATTGACACCACGCCTGACCTCGCCAAAACGCTACGCCGCCTGCAAGCCGA
TGGCTTCACGGTCGCGGCGTCAGCGCTCGACGGGCAGGACTACCGCTTCTTTGCTGAGTGGCCCGCCCGCCGCGTCCTCG
TCATCGGCAACGAAGCCAACGGCATCAGCGCCGAAATTCTCGCCCTCGCCGACCGCCGGCTGCTCATTCCCCCCGCCGGA
GCAAGACCTGCCGTAGAATCCCTCAACGCCTCGGTGTCAGCGGGAATTCTGATGGCGACGATACATGGATAA

Upstream 100 bases:

>100_bases
ACGCGAGCGACCTGTCGTCGAGGCCGGGTACGCCGCCAACCGAATTTTCCCATGATCCGAAAGCGGTCATGGAGCGCTTC
AAACGCTCGACGGAGAAACG

Downstream 100 bases:

>100_bases
TTGATGAATTCTGTCAGGGCGCACCGGTATGTCCGCCCTGTTGTTCTTGCCGGGCTGGAGCTCGGTGCTCCCGGGGTGCT
GCGCGGGGAGGAGTGTTGCA

Product: SpoU rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MRRESFPPLSKAMLGRLARLGQKKHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAGKAWLAG
PNEFKRLAQTTSPQGVVAAFRKPESGEFRPASARSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVR
SSAGSIFALAIDTTPDLAKTLRRLQADGFTVAASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAG
ARPAVESLNASVSAGILMATIHG

Sequences:

>Translated_263_residues
MRRESFPPLSKAMLGRLARLGQKKHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAGKAWLAG
PNEFKRLAQTTSPQGVVAAFRKPESGEFRPASARSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVR
SSAGSIFALAIDTTPDLAKTLRRLQADGFTVAASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAG
ARPAVESLNASVSAGILMATIHG
>Mature_263_residues
MRRESFPPLSKAMLGRLARLGQKKHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAGKAWLAG
PNEFKRLAQTTSPQGVVAAFRKPESGEFRPASARSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVR
SSAGSIFALAIDTTPDLAKTLRRLQADGFTVAASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAG
ARPAVESLNASVSAGILMATIHG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=173, Percent_Identity=33.5260115606936, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1790623, Length=143, Percent_Identity=30.0699300699301, Blast_Score=68, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24666840, Length=285, Percent_Identity=25.2631578947368, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28027; Mature: 28027

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRESFPPLSKAMLGRLARLGQKKHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDE
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHCC
KAAGQLDGLERFAGKAWLAGPNEFKRLAQTTSPQGVVAAFRKPESGEFRPASARSFVVAL
CCCCHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCHHHEECCCCCCCCCCCCCCEEEEEE
DDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTPDLAKT
ECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCEEEEEECCCHHHHHH
LRRLQADGFTVAASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAG
HHHHHCCCEEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCHHHHEEECCCEEEECCCC
ARPAVESLNASVSAGILMATIHG
CCHHHHHHCCCHHCCEEEEEECC
>Mature Secondary Structure
MRRESFPPLSKAMLGRLARLGQKKHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDE
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHCC
KAAGQLDGLERFAGKAWLAGPNEFKRLAQTTSPQGVVAAFRKPESGEFRPASARSFVVAL
CCCCHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCHHHEECCCCCCCCCCCCCCEEEEEE
DDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTPDLAKT
ECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCEEEEEECCCHHHHHH
LRRLQADGFTVAASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAG
HHHHHCCCEEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCHHHHEEECCCEEEECCCC
ARPAVESLNASVSAGILMATIHG
CCHHHHHHCCCHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]