| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21674322
Identifier: 21674322
GI number: 21674322
Start: 1407544
End: 1408848
Strand: Reverse
Name: 21674322
Synonym: CT1502
Alternate gene names: NA
Gene position: 1408848-1407544 (Counterclockwise)
Preceding gene: 21674323
Following gene: 21674320
Centisome position: 65.38
GC content: 61.84
Gene sequence:
>1305_bases ATGAGCGCTGTCATCAAGCGGGCGCAGTTCGCCATCCCGCCGCTCTCGCTCATGATTCTCAGTTCGGTCGAAGTCCTCGG CGTCCGGCAGGAGATTTGCGACCTTCGTTTCGACAAGCTGCCGCTCGACAGGTCGTGGGATCTGGTCGGCATCAGCGTCC AGACCGGCGCGGTCAAACCGGCCGTCGAGGTGGCATCGCTGTTTCGCGAGCGCGGCGTACCGGTGGTGCTGGGCGGGCCG TACGTCTCGATTTTTCCGGAACGCTGCCGCGAGCACGGCGATGTGCTTGTGATCGGCGAGGCCGACGATTTGTGGCGCGA AGTGCTCGAAGATTTGCGTCGCGGTGCGCTCAAGCCGGAGTACCGGCAGGGGGCATTTCCCGACCTTTCCGCGCCGCGCC CGGTCGATAAATCCGCGCTTCAGATCAACCGCTACTTCACGACCAACGTCGTGCAGACCACGCGCGGTTGCCCCTACAGT TGCGATTTCTGTAGCGTGCACGTGATGAACGGCCACAAGCTGCGGCACCGTCCGGTTGGTGAAGTGGTGCGCGAGGTGGA GGCATTCCTGCGCGAGGACAAGCGCATCTTCTTCTTTCTCGACGACACGATCAACGCCGACGAAGCCTACGCCTTGGAGC TGTTCTCGAAGCTGATTCCGTTCAACATCAAGTGGGTCGGGCAGGCCACCACGCTGCTTGGCGAGAATCCGAAGCTGCTT GACATTTTCTCCCGCTCCGGCTGCGGGGCGCTGCTGGTCGGCATCGAGAGCCTTGCCGACGAAAGTAACCGGGCGCATCA CAAATTTCATAACCCTGCCGAGCGTCAGGTGCGCTGTATCCAGGAGATTCGCAAGGCAGGCATCTGCGTCTATGGGAGTT TCATCTACGGCCTCGACGGCGACACGCTCGCCATGCCGGAGCGGATCGATGCATTCATCGATGAGGCGGGTGTTGACGTG CCGGGCATCAACCTGTTGCGCCCGATTCCGGGCACCGGCGTGTTCGACCGCCTCGCTGCCGAGGGACGGCTTCTGCACCC CAGCCACGACCACGACGCCTTCCGCTTTTCGTGGGGGCAGGAGATGCTCTACTATCCAAAGCAGATGAGCCTCGACCAGT TCATCCCGAGCTACACCGAGCTCACCTCGAAAGTTTTTACTCCGCGCCGAGCTATCAAACGGGCAATGCGCGCACCCACG CTCCGCTCGGCAGTGCTGATGTTCAACATGCTCTACGTGCACATGTACGGGTTGTCGAGGAAAGACTTGCGGCGGCAGCT CGCGGAACTCAGCTCAGTGCGCTGA
Upstream 100 bases:
>100_bases GGTTCTTCTCGTTTTCGTGCAGGCCTCCAGCGGCGTGGACGGCGCGGCTTCGCTCGAAAGCACGCCCAAATCCGGCCTCG CCCTCCTGAAAGATCGCGCC
Downstream 100 bases:
>100_bases TCTCTTCTTCGAGCATCTGCTGCATGTAGAGGTCCGCGTAGTAGCGGCCGTTCTGGAGCAGCTCTTCATGGGTGCCGCTT TCGGCGATGGCGCCGTCGTG
Product: BchE/P-methylase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MSAVIKRAQFAIPPLSLMILSSVEVLGVRQEICDLRFDKLPLDRSWDLVGISVQTGAVKPAVEVASLFRERGVPVVLGGP YVSIFPERCREHGDVLVIGEADDLWREVLEDLRRGALKPEYRQGAFPDLSAPRPVDKSALQINRYFTTNVVQTTRGCPYS CDFCSVHVMNGHKLRHRPVGEVVREVEAFLREDKRIFFFLDDTINADEAYALELFSKLIPFNIKWVGQATTLLGENPKLL DIFSRSGCGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKAGICVYGSFIYGLDGDTLAMPERIDAFIDEAGVDV PGINLLRPIPGTGVFDRLAAEGRLLHPSHDHDAFRFSWGQEMLYYPKQMSLDQFIPSYTELTSKVFTPRRAIKRAMRAPT LRSAVLMFNMLYVHMYGLSRKDLRRQLAELSSVR
Sequences:
>Translated_434_residues MSAVIKRAQFAIPPLSLMILSSVEVLGVRQEICDLRFDKLPLDRSWDLVGISVQTGAVKPAVEVASLFRERGVPVVLGGP YVSIFPERCREHGDVLVIGEADDLWREVLEDLRRGALKPEYRQGAFPDLSAPRPVDKSALQINRYFTTNVVQTTRGCPYS CDFCSVHVMNGHKLRHRPVGEVVREVEAFLREDKRIFFFLDDTINADEAYALELFSKLIPFNIKWVGQATTLLGENPKLL DIFSRSGCGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKAGICVYGSFIYGLDGDTLAMPERIDAFIDEAGVDV PGINLLRPIPGTGVFDRLAAEGRLLHPSHDHDAFRFSWGQEMLYYPKQMSLDQFIPSYTELTSKVFTPRRAIKRAMRAPT LRSAVLMFNMLYVHMYGLSRKDLRRQLAELSSVR >Mature_433_residues SAVIKRAQFAIPPLSLMILSSVEVLGVRQEICDLRFDKLPLDRSWDLVGISVQTGAVKPAVEVASLFRERGVPVVLGGPY VSIFPERCREHGDVLVIGEADDLWREVLEDLRRGALKPEYRQGAFPDLSAPRPVDKSALQINRYFTTNVVQTTRGCPYSC DFCSVHVMNGHKLRHRPVGEVVREVEAFLREDKRIFFFLDDTINADEAYALELFSKLIPFNIKWVGQATTLLGENPKLLD IFSRSGCGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKAGICVYGSFIYGLDGDTLAMPERIDAFIDEAGVDVP GINLLRPIPGTGVFDRLAAEGRLLHPSHDHDAFRFSWGQEMLYYPKQMSLDQFIPSYTELTSKVFTPRRAIKRAMRAPTL RSAVLMFNMLYVHMYGLSRKDLRRQLAELSSVR
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 49021; Mature: 48890
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVIKRAQFAIPPLSLMILSSVEVLGVRQEICDLRFDKLPLDRSWDLVGISVQTGAVKP CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCH AVEVASLFRERGVPVVLGGPYVSIFPERCREHGDVLVIGEADDLWREVLEDLRRGALKPE HHHHHHHHHHCCCCEEECCCHHEECHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC YRQGAFPDLSAPRPVDKSALQINRYFTTNVVQTTRGCPYSCDFCSVHVMNGHKLRHRPVG HHCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHH EVVREVEAFLREDKRIFFFLDDTINADEAYALELFSKLIPFNIKWVGQATTLLGENPKLL HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCEE DIFSRSGCGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKAGICVYGSFIYGLDG EEECCCCCCHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCC DTLAMPERIDAFIDEAGVDVPGINLLRPIPGTGVFDRLAAEGRLLHPSHDHDAFRFSWGQ CCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHCCCCEECCCCCCCCEEEECCC EMLYYPKQMSLDQFIPSYTELTSKVFTPRRAIKRAMRAPTLRSAVLMFNMLYVHMYGLSR HHHHCCCCCCHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH KDLRRQLAELSSVR HHHHHHHHHHHCCC >Mature Secondary Structure SAVIKRAQFAIPPLSLMILSSVEVLGVRQEICDLRFDKLPLDRSWDLVGISVQTGAVKP CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCH AVEVASLFRERGVPVVLGGPYVSIFPERCREHGDVLVIGEADDLWREVLEDLRRGALKPE HHHHHHHHHHCCCCEEECCCHHEECHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC YRQGAFPDLSAPRPVDKSALQINRYFTTNVVQTTRGCPYSCDFCSVHVMNGHKLRHRPVG HHCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHH EVVREVEAFLREDKRIFFFLDDTINADEAYALELFSKLIPFNIKWVGQATTLLGENPKLL HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCEE DIFSRSGCGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKAGICVYGSFIYGLDG EEECCCCCCHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCC DTLAMPERIDAFIDEAGVDVPGINLLRPIPGTGVFDRLAAEGRLLHPSHDHDAFRFSWGQ CCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHCCCCEECCCCCCCCEEEECCC EMLYYPKQMSLDQFIPSYTELTSKVFTPRRAIKRAMRAPTLRSAVLMFNMLYVHMYGLSR HHHHCCCCCCHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH KDLRRQLAELSSVR HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]