| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is panB [H]
Identifier: 21674163
GI number: 21674163
Start: 1260856
End: 1261689
Strand: Reverse
Name: panB [H]
Synonym: CT1341
Alternate gene names: 21674163
Gene position: 1261689-1260856 (Counterclockwise)
Preceding gene: 21674164
Following gene: 21674162
Centisome position: 58.55
GC content: 60.91
Gene sequence:
>834_bases ATGAACCAGCCCTCTGGCAATAAATTGCCCCACGTCACAACCCGCCGGATGCTCGATATGAAAGAGCGCGGCGAGAAGAT CGCCATGCTGACCGCCTATGACTACACGATGGCGCGGATTCTGGACCGCTCGGGCGTTGACGCGATTCTTGTCGGCGATT CGGCGAGCAACGTCTTCGCCGGGCACAGCACCACGCTGCCGATGACCGTTGACGAGATGATCTACCACGCCAAGGCGGTG GTGCGTGGCGTGCAGGCAGAGACGCGACGGGCGATGGTGATTGTCGATATGCCCTTCATGAGCTACCAGCTCTCGCCGGA AGATGCGGTGCGCAACGCCGGGAAAATCATGAAAGAGCACGAGTGCGACGCGGTGAAAATGGAGGGGGGCAAGGTGATCG CCGAAGCGGTCAAGCGGATCACCGATATCGGCATTCCGGTGATGGGCCACCTCGGCCTCATGCCGCAGTCGATCTACAAA TATGGCAGCTACAAGGTGCGCGCGATGGAGGAGGAGGAGGCCCGGCAGCTCATCGAGGATGCGAAGATCATCGAGGAGGC TGGAGCGTTCGCCATCGTGCTCGAAAAGATTCCATCGAAGCTCGCCGGTGAGGTGAGCCGCTTGCTGACCATTCCGACTA TCGGCATCGGCGCGGGGCCGGAGTGCGACGGCCAGGTTCTGGTCATCAACGACATGCTTGGCCTCAGCACCGACTTCCGC CCTCGCTTCGTCCGCCGCTACGCTGACCTCTCCTCGGTGATCGAGCAAGCGGTCAAAAGCTACGTCGAGGATGTGCGGAG CAACAGCTTCCCGTCGGAGGATGAGAGTTACTGA
Upstream 100 bases:
>100_bases TGAAGCAGGAAAATCTTTCGGATCGGAAGCTAAAATGCTGACTTTGGGGGAGATCGGACGCCTCGAAGGTTTTCAACAAT CACTCTAACTGACGACCATC
Downstream 100 bases:
>100_bases CGGGAACAGGCATTGTTTCCGGATTGCAAAATTTCATGAATCAATTATCTTTCATGACGATCTCCGCAATCGGGCTCCGG TATTTTTAACGTGCAGTGAC
Product: 3-methyl-2-oxobutanoate hydroxymethyltransferase
Products: NA
Alternate protein names: Ketopantoate hydroxymethyltransferase; KPHMT [H]
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MNQPSGNKLPHVTTRRMLDMKERGEKIAMLTAYDYTMARILDRSGVDAILVGDSASNVFAGHSTTLPMTVDEMIYHAKAV VRGVQAETRRAMVIVDMPFMSYQLSPEDAVRNAGKIMKEHECDAVKMEGGKVIAEAVKRITDIGIPVMGHLGLMPQSIYK YGSYKVRAMEEEEARQLIEDAKIIEEAGAFAIVLEKIPSKLAGEVSRLLTIPTIGIGAGPECDGQVLVINDMLGLSTDFR PRFVRRYADLSSVIEQAVKSYVEDVRSNSFPSEDESY
Sequences:
>Translated_277_residues MNQPSGNKLPHVTTRRMLDMKERGEKIAMLTAYDYTMARILDRSGVDAILVGDSASNVFAGHSTTLPMTVDEMIYHAKAV VRGVQAETRRAMVIVDMPFMSYQLSPEDAVRNAGKIMKEHECDAVKMEGGKVIAEAVKRITDIGIPVMGHLGLMPQSIYK YGSYKVRAMEEEEARQLIEDAKIIEEAGAFAIVLEKIPSKLAGEVSRLLTIPTIGIGAGPECDGQVLVINDMLGLSTDFR PRFVRRYADLSSVIEQAVKSYVEDVRSNSFPSEDESY >Mature_277_residues MNQPSGNKLPHVTTRRMLDMKERGEKIAMLTAYDYTMARILDRSGVDAILVGDSASNVFAGHSTTLPMTVDEMIYHAKAV VRGVQAETRRAMVIVDMPFMSYQLSPEDAVRNAGKIMKEHECDAVKMEGGKVIAEAVKRITDIGIPVMGHLGLMPQSIYK YGSYKVRAMEEEEARQLIEDAKIIEEAGAFAIVLEKIPSKLAGEVSRLLTIPTIGIGAGPECDGQVLVINDMLGLSTDFR PRFVRRYADLSSVIEQAVKSYVEDVRSNSFPSEDESY
Specific function: Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate [H]
COG id: COG0413
COG function: function code H; Ketopantoate hydroxymethyltransferase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the panB family [H]
Homologues:
Organism=Escherichia coli, GI1786326, Length=257, Percent_Identity=39.6887159533074, Blast_Score=204, Evalue=6e-54, Organism=Saccharomyces cerevisiae, GI6319653, Length=255, Percent_Identity=36.4705882352941, Blast_Score=176, Evalue=5e-45,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003700 - InterPro: IPR015813 [H]
Pfam domain/function: PF02548 Pantoate_transf [H]
EC number: =2.1.2.11 [H]
Molecular weight: Translated: 30609; Mature: 30609
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPSGNKLPHVTTRRMLDMKERGEKIAMLTAYDYTMARILDRSGVDAILVGDSASNVFA CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCEEEECCCCCCEEC GHSTTLPMTVDEMIYHAKAVVRGVQAETRRAMVIVDMPFMSYQLSPEDAVRNAGKIMKEH CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHC ECDAVKMEGGKVIAEAVKRITDIGIPVMGHLGLMPQSIYKYGSYKVRAMEEEEARQLIED CCCEEEECCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCEEEEECCHHHHHHHHHH AKIIEEAGAFAIVLEKIPSKLAGEVSRLLTIPTIGIGAGPECDGQVLVINDMLGLSTDFR HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEECCCCCCCCCC PRFVRRYADLSSVIEQAVKSYVEDVRSNSFPSEDESY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNQPSGNKLPHVTTRRMLDMKERGEKIAMLTAYDYTMARILDRSGVDAILVGDSASNVFA CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCEEEECCCCCCEEC GHSTTLPMTVDEMIYHAKAVVRGVQAETRRAMVIVDMPFMSYQLSPEDAVRNAGKIMKEH CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHC ECDAVKMEGGKVIAEAVKRITDIGIPVMGHLGLMPQSIYKYGSYKVRAMEEEEARQLIED CCCEEEECCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCEEEEECCHHHHHHHHHH AKIIEEAGAFAIVLEKIPSKLAGEVSRLLTIPTIGIGAGPECDGQVLVINDMLGLSTDFR HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEECCCCCCCCCC PRFVRRYADLSSVIEQAVKSYVEDVRSNSFPSEDESY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA