| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
Click here to switch to the map view.
The map label for this gene is yxiO [H]
Identifier: 21674159
GI number: 21674159
Start: 1257575
End: 1258882
Strand: Reverse
Name: yxiO [H]
Synonym: CT1337
Alternate gene names: 21674159
Gene position: 1258882-1257575 (Counterclockwise)
Preceding gene: 21674160
Following gene: 21674158
Centisome position: 58.42
GC content: 57.8
Gene sequence:
>1308_bases ATGGGCATGAACGACACATCGCAGAAGGCCCGGATTTTCTCATGGCTGCTGTTCGATTTCGCGAATACATCGTTCAGCGT CATGATGGTGACGTTCGCCTTTCCGCTCTACTTCAAGAACATAATCTGCGAGGGAGAACCCAAGGGTGACGCGCTCTGGG GCGCGAGCGTCAGTATTTCGATGCTGCTTGTGGCGCTCATCTCGCCGGTGCTCGGCGCGCAGGCGGACTACTCGGGCCGC CGCAAACGCTTTCTCTTCGCTTTCACGCTGATATCGGTACTTGCTACGGCGCTACTCTCTTTTTCCGGGCCGGGTATGGT GCTGTTCGCCGCAGTGCTCTTCATTCTTGCCAACATCGGCTTTGAGGGTGGCCTTGTGTTCTACGATGCGTGGCTTCCGG AGATCACCTCGCCGCGAAGCACCGGCAGGGTTTCCGGCTACGGTTTCGCGATGGGTTACCTCGGTGCGTTCGCCATCCTC CTGATCAATCTGCCGCTGCTCTCAAAGGGGATTGTGCCAGCCAACATTCCCAACCTGAAGCTCAGTTTCCTCATCGTCGC GCTCTTTTTCGCCGTGTTCTCCGCGCCGATTTTCGTGATGCTGCGCGACACCAAAGGCTCGGTGGGCGATTCATCCAGCG GTGAGCGGCGGCGCGAGCGCGGCTCGTCGTTTATGCACTCGATCAAAGAGGTCGGCTACACGATCCGGCATATCATGAGC TATCCCGATCTCGCGCGCTTCCTGCTCGCCTACTTTTTCTACAACGACGCGATCCTGACCGTTATCGCCTTCTCCTCGAT CTACGCGCAGAACACGCTTGGATTCACGACGGGCGAACTCATCACCTTTTTCATGACCGTGCAGACCACCGCCATTCTTG GTTCGGTGGTGTTTGGCTTTGTCACCGACAAGATCGGCCCGAAGCGTACCATCGTTATCACGCTCTTTATCTGGTTCGCG GTGATTCTGCTGGCGATTCTTTCCGGAAGCAAGGAGACCTTTATCATGACTGGCCTTCTTGCCGGCATGTCGATGGGGTC GTCGCAGGCAGCTTCGCGCTCGCTGATGGCGAGGCTGACGCCGAAGGAGCACGTTACGGAATTTTTCGGCTTCTACGACG GTAGTTTTGGAAAGGCGTCGGCGATCATCGGTCCTTTGGTGTTCGGTGTCGTTTCCGCCCAAGTCGGCAGCCAGAAGGTC GCGCTCGCTTCGCTGCTGGTGTTTTTCTGCCTTGGTCTCCTGATTATTACCGGCGTGAGGACGCGAGCCACCGCCGAAGC CTCACCGGAAGCCTCCCGGATCGAGTGA
Upstream 100 bases:
>100_bases TCCTGAACGCGCCAGCGAGAAGCTGCTCGGCTCGGAGGATGGCAGGCGGCTGTTCGAATCGCTTTTCGCGCATCTTGCTG GAGCGTAACCCAGCCTTCTG
Downstream 100 bases:
>100_bases CGGCAGTGACGTGTAACCCATTTTGATAATGACTGTTATGAACGATGAGTTGAAGGCTGAGGACGCTGGAAACGAACGCG GCTGCGTGGATTGCCATACG
Product: MFS transporter family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MGMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSISMLLVALISPVLGAQADYSGR RKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIGFEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAIL LINLPLLSKGIVPANIPNLKLSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGFVTDKIGPKRTIVITLFIWFA VILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLTPKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKV ALASLLVFFCLGLLIITGVRTRATAEASPEASRIE
Sequences:
>Translated_435_residues MGMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSISMLLVALISPVLGAQADYSGR RKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIGFEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAIL LINLPLLSKGIVPANIPNLKLSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGFVTDKIGPKRTIVITLFIWFA VILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLTPKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKV ALASLLVFFCLGLLIITGVRTRATAEASPEASRIE >Mature_434_residues GMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSISMLLVALISPVLGAQADYSGRR KRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIGFEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAILL INLPLLSKGIVPANIPNLKLSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMSY PDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGFVTDKIGPKRTIVITLFIWFAV ILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLTPKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKVA LASLLVFFCLGLLIITGVRTRATAEASPEASRIE
Specific function: Unknown
COG id: COG2270
COG function: function code R; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47102; Mature: 46971
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSIS CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHH MLLVALISPVLGAQADYSGRRKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIG HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC FEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAILLINLPLLSKGIVPANIPNLK CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VTDKIGPKRTIVITLFIWFAVILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLT HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC PKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKVALASLLVFFCLGLLIITGVR CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC TRATAEASPEASRIE CCCCCCCCCCCCCCC >Mature Secondary Structure GMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSIS CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHH MLLVALISPVLGAQADYSGRRKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIG HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC FEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAILLINLPLLSKGIVPANIPNLK CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VTDKIGPKRTIVITLFIWFAVILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLT HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC PKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKVALASLLVFFCLGLLIITGVR CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC TRATAEASPEASRIE CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]