Definition Chlorobium tepidum TLS, complete genome.
Accession NC_002932
Length 2,154,946

Click here to switch to the map view.

The map label for this gene is yxiO [H]

Identifier: 21674159

GI number: 21674159

Start: 1257575

End: 1258882

Strand: Reverse

Name: yxiO [H]

Synonym: CT1337

Alternate gene names: 21674159

Gene position: 1258882-1257575 (Counterclockwise)

Preceding gene: 21674160

Following gene: 21674158

Centisome position: 58.42

GC content: 57.8

Gene sequence:

>1308_bases
ATGGGCATGAACGACACATCGCAGAAGGCCCGGATTTTCTCATGGCTGCTGTTCGATTTCGCGAATACATCGTTCAGCGT
CATGATGGTGACGTTCGCCTTTCCGCTCTACTTCAAGAACATAATCTGCGAGGGAGAACCCAAGGGTGACGCGCTCTGGG
GCGCGAGCGTCAGTATTTCGATGCTGCTTGTGGCGCTCATCTCGCCGGTGCTCGGCGCGCAGGCGGACTACTCGGGCCGC
CGCAAACGCTTTCTCTTCGCTTTCACGCTGATATCGGTACTTGCTACGGCGCTACTCTCTTTTTCCGGGCCGGGTATGGT
GCTGTTCGCCGCAGTGCTCTTCATTCTTGCCAACATCGGCTTTGAGGGTGGCCTTGTGTTCTACGATGCGTGGCTTCCGG
AGATCACCTCGCCGCGAAGCACCGGCAGGGTTTCCGGCTACGGTTTCGCGATGGGTTACCTCGGTGCGTTCGCCATCCTC
CTGATCAATCTGCCGCTGCTCTCAAAGGGGATTGTGCCAGCCAACATTCCCAACCTGAAGCTCAGTTTCCTCATCGTCGC
GCTCTTTTTCGCCGTGTTCTCCGCGCCGATTTTCGTGATGCTGCGCGACACCAAAGGCTCGGTGGGCGATTCATCCAGCG
GTGAGCGGCGGCGCGAGCGCGGCTCGTCGTTTATGCACTCGATCAAAGAGGTCGGCTACACGATCCGGCATATCATGAGC
TATCCCGATCTCGCGCGCTTCCTGCTCGCCTACTTTTTCTACAACGACGCGATCCTGACCGTTATCGCCTTCTCCTCGAT
CTACGCGCAGAACACGCTTGGATTCACGACGGGCGAACTCATCACCTTTTTCATGACCGTGCAGACCACCGCCATTCTTG
GTTCGGTGGTGTTTGGCTTTGTCACCGACAAGATCGGCCCGAAGCGTACCATCGTTATCACGCTCTTTATCTGGTTCGCG
GTGATTCTGCTGGCGATTCTTTCCGGAAGCAAGGAGACCTTTATCATGACTGGCCTTCTTGCCGGCATGTCGATGGGGTC
GTCGCAGGCAGCTTCGCGCTCGCTGATGGCGAGGCTGACGCCGAAGGAGCACGTTACGGAATTTTTCGGCTTCTACGACG
GTAGTTTTGGAAAGGCGTCGGCGATCATCGGTCCTTTGGTGTTCGGTGTCGTTTCCGCCCAAGTCGGCAGCCAGAAGGTC
GCGCTCGCTTCGCTGCTGGTGTTTTTCTGCCTTGGTCTCCTGATTATTACCGGCGTGAGGACGCGAGCCACCGCCGAAGC
CTCACCGGAAGCCTCCCGGATCGAGTGA

Upstream 100 bases:

>100_bases
TCCTGAACGCGCCAGCGAGAAGCTGCTCGGCTCGGAGGATGGCAGGCGGCTGTTCGAATCGCTTTTCGCGCATCTTGCTG
GAGCGTAACCCAGCCTTCTG

Downstream 100 bases:

>100_bases
CGGCAGTGACGTGTAACCCATTTTGATAATGACTGTTATGAACGATGAGTTGAAGGCTGAGGACGCTGGAAACGAACGCG
GCTGCGTGGATTGCCATACG

Product: MFS transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MGMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSISMLLVALISPVLGAQADYSGR
RKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIGFEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAIL
LINLPLLSKGIVPANIPNLKLSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS
YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGFVTDKIGPKRTIVITLFIWFA
VILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLTPKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKV
ALASLLVFFCLGLLIITGVRTRATAEASPEASRIE

Sequences:

>Translated_435_residues
MGMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSISMLLVALISPVLGAQADYSGR
RKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIGFEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAIL
LINLPLLSKGIVPANIPNLKLSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS
YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGFVTDKIGPKRTIVITLFIWFA
VILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLTPKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKV
ALASLLVFFCLGLLIITGVRTRATAEASPEASRIE
>Mature_434_residues
GMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSISMLLVALISPVLGAQADYSGRR
KRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIGFEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAILL
INLPLLSKGIVPANIPNLKLSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMSY
PDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGFVTDKIGPKRTIVITLFIWFAV
ILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLTPKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKVA
LASLLVFFCLGLLIITGVRTRATAEASPEASRIE

Specific function: Unknown

COG id: COG2270

COG function: function code R; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47102; Mature: 46971

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSIS
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHH
MLLVALISPVLGAQADYSGRRKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIG
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
FEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAILLINLPLLSKGIVPANIPNLK
CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
LSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTDKIGPKRTIVITLFIWFAVILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLT
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
PKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKVALASLLVFFCLGLLIITGVR
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
TRATAEASPEASRIE
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
GMNDTSQKARIFSWLLFDFANTSFSVMMVTFAFPLYFKNIICEGEPKGDALWGASVSIS
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHH
MLLVALISPVLGAQADYSGRRKRFLFAFTLISVLATALLSFSGPGMVLFAAVLFILANIG
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
FEGGLVFYDAWLPEITSPRSTGRVSGYGFAMGYLGAFAILLINLPLLSKGIVPANIPNLK
CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
LSFLIVALFFAVFSAPIFVMLRDTKGSVGDSSSGERRRERGSSFMHSIKEVGYTIRHIMS
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
YPDLARFLLAYFFYNDAILTVIAFSSIYAQNTLGFTTGELITFFMTVQTTAILGSVVFGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTDKIGPKRTIVITLFIWFAVILLAILSGSKETFIMTGLLAGMSMGSSQAASRSLMARLT
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
PKEHVTEFFGFYDGSFGKASAIIGPLVFGVVSAQVGSQKVALASLLVFFCLGLLIITGVR
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
TRATAEASPEASRIE
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]