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The map label for this gene is sodB [H]

Identifier: 21674036

GI number: 21674036

Start: 1136928

End: 1137530

Strand: Direct

Name: sodB [H]

Synonym: CT1211

Alternate gene names: 21674036

Gene position: 1136928-1137530 (Clockwise)

Preceding gene: 21674033

Following gene: 21674038

Centisome position: 52.76

GC content: 57.21

Gene sequence:

>603_bases
ATGGCATATCAGCAACCTGCACTCCCCTACGCCGATAACGCGCTCGAACCGCATATCTCTGCCAATACCATCGGCTTTCA
CTACGGCAAGCACCATGCGGCCTACGTCAAAAACTACAACGGTTTCGTCGAAGGCACGCCATATGACGCCATGAGTCTCG
AAGAGGTGATCATCCAGACGGCAAGTGACGCCTCGAAGACTGGCATATTCAACAATGGCGCGCAGGCATGGAACCACAGC
TTCTACTGGAACTGCCTCACTCCGAACGGCGGCGGCGAGCCAACCGGCGAAATCGCCACGAAAATCACCGAAGATTTCGG
CAGCGTTGACAAGTTCAAAGAGGAGCTGAAAAACGCCGCTGCAACCCAGTTCGGTAGCGGCTGGGCCTGGCTGGTGCTCG
ATGGCGGCAAGCTCAAGGTAACCAAAACCGGCAACGCCCAGAACCCGATGACCTCCGGCCAGACCCCGCTGCTCTGCATC
GACGTCTGGGAACACGCCTACTACCTCGATTACCAGAACCGCCGCCCCGACCACGTGGCCGCCGTGATCGAAAACCTGAT
CAACTGGGAGTTCATCAACGCTAATTACGCTGCGGCGAAATAA

Upstream 100 bases:

>100_bases
CGCAAATTATTTTTTGCCCGCTGAAACTAACAAGGTCAGGAGCCGGGTTAAAGGGTTACTTCCTAACGTAGCCTGCATAA
CCATAAAAATCAATAGTCAC

Downstream 100 bases:

>100_bases
GCCTGCCGGGTAAAATCTACAACGAAAGGCTCCGTTTTCCGGGGCCTTTCTTGTTTTTCGTCAAATGCTGATGGAAGCTA
TGGATCGAATAATGAACTGT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGFVEGTPYDAMSLEEVIIQTASDASKTGIFNNGAQAWNHS
FYWNCLTPNGGGEPTGEIATKITEDFGSVDKFKEELKNAAATQFGSGWAWLVLDGGKLKVTKTGNAQNPMTSGQTPLLCI
DVWEHAYYLDYQNRRPDHVAAVIENLINWEFINANYAAAK

Sequences:

>Translated_200_residues
MAYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGFVEGTPYDAMSLEEVIIQTASDASKTGIFNNGAQAWNHS
FYWNCLTPNGGGEPTGEIATKITEDFGSVDKFKEELKNAAATQFGSGWAWLVLDGGKLKVTKTGNAQNPMTSGQTPLLCI
DVWEHAYYLDYQNRRPDHVAAVIENLINWEFINANYAAAK
>Mature_199_residues
AYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGFVEGTPYDAMSLEEVIIQTASDASKTGIFNNGAQAWNHSF
YWNCLTPNGGGEPTGEIATKITEDFGSVDKFKEELKNAAATQFGSGWAWLVLDGGKLKVTKTGNAQNPMTSGQTPLLCID
VWEHAYYLDYQNRRPDHVAAVIENLINWEFINANYAAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=48.2412060301507, Blast_Score=166, Evalue=9e-42,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=48.2412060301507, Blast_Score=166, Evalue=9e-42,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=39.1959798994975, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=53.7688442211055, Blast_Score=226, Evalue=5e-61,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=44.7619047619048, Blast_Score=169, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=41.2060301507538, Blast_Score=131, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=40, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=37.9807692307692, Blast_Score=118, Evalue=7e-28,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=37.2549019607843, Blast_Score=119, Evalue=1e-27,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22067; Mature: 21935

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGFVEGTPYDAMSLEEVIIQT
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCEECCCCCCHHHHHHHHHHC
ASDASKTGIFNNGAQAWNHSFYWNCLTPNGGGEPTGEIATKITEDFGSVDKFKEELKNAA
CCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
ATQFGSGWAWLVLDGGKLKVTKTGNAQNPMTSGQTPLLCIDVWEHAYYLDYQNRRPDHVA
HHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHH
AVIENLINWEFINANYAAAK
HHHHHHHCEEEECCCCCCCC
>Mature Secondary Structure 
AYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGFVEGTPYDAMSLEEVIIQT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCEECCCCCCHHHHHHHHHHC
ASDASKTGIFNNGAQAWNHSFYWNCLTPNGGGEPTGEIATKITEDFGSVDKFKEELKNAA
CCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
ATQFGSGWAWLVLDGGKLKVTKTGNAQNPMTSGQTPLLCIDVWEHAYYLDYQNRRPDHVA
HHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHH
AVIENLINWEFINANYAAAK
HHHHHHHCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]