| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21673996
Identifier: 21673996
GI number: 21673996
Start: 1100373
End: 1101032
Strand: Reverse
Name: 21673996
Synonym: CT1170
Alternate gene names: NA
Gene position: 1101032-1100373 (Counterclockwise)
Preceding gene: 21673997
Following gene: 21673995
Centisome position: 51.09
GC content: 54.09
Gene sequence:
>660_bases ATGTCACTACTTGAAAAAATCAACAGTAGCACCTGCACGCTCAGGTTCAAAAACGACTGGCTGAAGATATTCACCTGTCC GGTGCCTTCATCCGATTTTCTGTCGTTCGTCGGCGTTGCCACCATCGATGCGCCCCAGCACGCCGTGCTCAGTCTTCTGT ACGACATCGAGTCGGCAACCGAGTGGGTCTGGAAAACTCGGGAGATGCGCGTGCTCCAGGAGCTTGCCGACGACAACGAG GGACGGGTGGTCTATCAGGTCGTGAGTGCTCCGTGGCCGGTGAGCGACAGGGAGATCATCAGCCGATCGACTGCCTACAA GGATCCTGAAACAGGTGAAGTCTTTATCAAGATCGAAAGCCTGCCCGATTTCATTCCGGAAACCAGCAATTGCGTCAGGG TGCGCAAACTCGAAGGTGCCTGGAATATCCTGCCGCTGTCCGAAAATTCGTGCCGCGTGGTTTTCAGGCTGCACATCGAG CCTGCCGGAGAAATTCCGTCATGGCTTGCCAACATCGCGGTGATCGATACGCCGTATCATACGCTGAACAACATGCGCGA CATGGTCAAGCGTGAAAAGTATAAAAATCCCGTTGGCGCGCCCTTGAAGGAATCGACGGAGGGCATCATCAGGAACTACA ACGATTTCATCACCGAGTAA
Upstream 100 bases:
>100_bases GCATTTCATCGAAAAGAGCGCTTCATGAGTCAATAGGAAAAAGCTGTTTTTCAGGCAGTACGGAGGCCTTTAACCAATTT TTCATACAATCCGGTTTACT
Downstream 100 bases:
>100_bases TCCGCCGGGTCTGGCTCAATCATTACCATAACTGCCAAGTCAATGGATGTAGCAAGCGCCCTTGAGGGCAACTGGGAATT TCGGGTCGATCACAAGAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSLLEKINSSTCTLRFKNDWLKIFTCPVPSSDFLSFVGVATIDAPQHAVLSLLYDIESATEWVWKTREMRVLQELADDNE GRVVYQVVSAPWPVSDREIISRSTAYKDPETGEVFIKIESLPDFIPETSNCVRVRKLEGAWNILPLSENSCRVVFRLHIE PAGEIPSWLANIAVIDTPYHTLNNMRDMVKREKYKNPVGAPLKESTEGIIRNYNDFITE
Sequences:
>Translated_219_residues MSLLEKINSSTCTLRFKNDWLKIFTCPVPSSDFLSFVGVATIDAPQHAVLSLLYDIESATEWVWKTREMRVLQELADDNE GRVVYQVVSAPWPVSDREIISRSTAYKDPETGEVFIKIESLPDFIPETSNCVRVRKLEGAWNILPLSENSCRVVFRLHIE PAGEIPSWLANIAVIDTPYHTLNNMRDMVKREKYKNPVGAPLKESTEGIIRNYNDFITE >Mature_218_residues SLLEKINSSTCTLRFKNDWLKIFTCPVPSSDFLSFVGVATIDAPQHAVLSLLYDIESATEWVWKTREMRVLQELADDNEG RVVYQVVSAPWPVSDREIISRSTAYKDPETGEVFIKIESLPDFIPETSNCVRVRKLEGAWNILPLSENSCRVVFRLHIEP AGEIPSWLANIAVIDTPYHTLNNMRDMVKREKYKNPVGAPLKESTEGIIRNYNDFITE
Specific function: May play a role in the interaction of the bacterium with animal cells [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 START domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002913 [H]
Pfam domain/function: PF01852 START [H]
EC number: NA
Molecular weight: Translated: 25007; Mature: 24876
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS50848 START
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLEKINSSTCTLRFKNDWLKIFTCPVPSSDFLSFVGVATIDAPQHAVLSLLYDIESAT CCHHHHCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHH EWVWKTREMRVLQELADDNEGRVVYQVVSAPWPVSDREIISRSTAYKDPETGEVFIKIES HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECC LPDFIPETSNCVRVRKLEGAWNILPLSENSCRVVFRLHIEPAGEIPSWLANIAVIDTPYH CCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCHHHHHHHEEEEECCHH TLNNMRDMVKREKYKNPVGAPLKESTEGIIRNYNDFITE HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHCC >Mature Secondary Structure SLLEKINSSTCTLRFKNDWLKIFTCPVPSSDFLSFVGVATIDAPQHAVLSLLYDIESAT CHHHHCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHH EWVWKTREMRVLQELADDNEGRVVYQVVSAPWPVSDREIISRSTAYKDPETGEVFIKIES HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECC LPDFIPETSNCVRVRKLEGAWNILPLSENSCRVVFRLHIEPAGEIPSWLANIAVIDTPYH CCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCHHHHHHHEEEEECCHH TLNNMRDMVKREKYKNPVGAPLKESTEGIIRNYNDFITE HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 11276083 [H]