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The map label for this gene is rimM

Identifier: 21673991

GI number: 21673991

Start: 1096272

End: 1096775

Strand: Reverse

Name: rimM

Synonym: CT1165

Alternate gene names: 21673991

Gene position: 1096775-1096272 (Counterclockwise)

Preceding gene: 21673992

Following gene: 21673990

Centisome position: 50.9

GC content: 53.97

Gene sequence:

>504_bases
GTGGAACTGTTTCTGACAGGCGTCGTCCTGAAGCCCAAAGGGTTAAAAGGCGAACTCAAGGTGAAGCCGGTGACCGACTT
TCCTGAGAGCTTCCTGACGCGCCGAGAGTATTATATCGGCAAAACGCCGGAAGATGCCGTGCTTCGCAAGGTGCAGTCAG
CCAGGTTTCATCAGGGTTTTGCCTGGCTTGTGTTCGAAGGCGCCGGTTCGCGCGAAGGTGCCGAAGCGCTCGTCGGGTGC
GGACTCTACGTGACCAGGGATGCCTTGGTGGCTATGCCGGATGACCGGGCATACATTCATGAGCTGATCGGTCTGGACGT
GTTCGACGAAACGGAGGGGCGTGTCGGCAAGATCAGCGATGTGTTGCAGATGCCTGCGCATGACGTGTACGAAGTCGATA
CTGGTGACAGGAAAGTGCTTATACCGGCAGTAGAGGATTTTATCACTGAAACCGATCTCGAAAAAGGGATGGTGAGGTTG
AAGAGATTCAAAGAATTTTTGTAA

Upstream 100 bases:

>100_bases
CAACGCCAAACTCCGCCGCCGTCAGGCCAAGAAAGCTGCCGAAGCTGCTGGTTCAGCCGAAGGCTGAGAATAACAGGGAA
TCCGAACCGGCTGAACCTGA

Downstream 100 bases:

>100_bases
CGTCACTGCGTTGCGGCTTCTTTTTTGAAGTTTTGGCGCAATGTTCTTGACAAGATTGACAGGCAACGACTCAGGTGTGA
AGCCATGCGGATAGAGATCA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MELFLTGVVLKPKGLKGELKVKPVTDFPESFLTRREYYIGKTPEDAVLRKVQSARFHQGFAWLVFEGAGSREGAEALVGC
GLYVTRDALVAMPDDRAYIHELIGLDVFDETEGRVGKISDVLQMPAHDVYEVDTGDRKVLIPAVEDFITETDLEKGMVRL
KRFKEFL

Sequences:

>Translated_167_residues
MELFLTGVVLKPKGLKGELKVKPVTDFPESFLTRREYYIGKTPEDAVLRKVQSARFHQGFAWLVFEGAGSREGAEALVGC
GLYVTRDALVAMPDDRAYIHELIGLDVFDETEGRVGKISDVLQMPAHDVYEVDTGDRKVLIPAVEDFITETDLEKGMVRL
KRFKEFL
>Mature_167_residues
MELFLTGVVLKPKGLKGELKVKPVTDFPESFLTRREYYIGKTPEDAVLRKVQSARFHQGFAWLVFEGAGSREGAEALVGC
GLYVTRDALVAMPDDRAYIHELIGLDVFDETEGRVGKISDVLQMPAHDVYEVDTGDRKVLIPAVEDFITETDLEKGMVRL
KRFKEFL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CHLTE (Q8KD89)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_662056.1
- ProteinModelPortal:   Q8KD89
- SMR:   Q8KD89
- GeneID:   1006528
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT1165
- NMPDR:   fig|194439.1.peg.1150
- TIGR:   CT1165
- HOGENOM:   HBG703775
- OMA:   FAWLFFE
- ProtClustDB:   CLSK637625
- BioCyc:   CTEP194439:CT_1165-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18810; Mature: 18810

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFLTGVVLKPKGLKGELKVKPVTDFPESFLTRREYYIGKTPEDAVLRKVQSARFHQGF
CEEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
AWLVFEGAGSREGAEALVGCGLYVTRDALVAMPDDRAYIHELIGLDVFDETEGRVGKISD
EEEEEECCCCCCCHHHHHHCCEEEECCEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHH
VLQMPAHDVYEVDTGDRKVLIPAVEDFITETDLEKGMVRLKRFKEFL
HHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELFLTGVVLKPKGLKGELKVKPVTDFPESFLTRREYYIGKTPEDAVLRKVQSARFHQGF
CEEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
AWLVFEGAGSREGAEALVGCGLYVTRDALVAMPDDRAYIHELIGLDVFDETEGRVGKISD
EEEEEECCCCCCCHHHHHHCCEEEECCEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHH
VLQMPAHDVYEVDTGDRKVLIPAVEDFITETDLEKGMVRLKRFKEFL
HHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901