| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is uvrA2 [H]
Identifier: 21673362
GI number: 21673362
Start: 533016
End: 535799
Strand: Direct
Name: uvrA2 [H]
Synonym: CT0527
Alternate gene names: 21673362
Gene position: 533016-535799 (Clockwise)
Preceding gene: 21673361
Following gene: 21673364
Centisome position: 24.73
GC content: 61.35
Gene sequence:
>2784_bases GTGCTTGGCGGCGTTTCGACACACAACCTCAAGCATGTCACCGTTCGCATTCCCCGCAACCGGTTCGTGGTTCTGACCGG CCTGAGCGGTTCCGGCAAGTCGAGCCTTGCCTTTGACACGCTTTACGCCGAGGGGCACCGGCGCTACGTCGAGTCGCTTT CGGCTTACGTTCGCCAGTTTCTCGAACGGATGCCCAAACCCGAGATTGAGACGGTCGAGGGGATCGCGCCTGCCATTGCC ATCGAGCAGAAGGCGATTCCGAAAAATCCCCGCTCGACGGTTGGTACCGTTTCTGAAATTTACGACTACCTGCGGCTGCT CTATGCGCGTATCGGCAAGATCTATTCACGCGACACCGGCGAGCTGGTGCTCAAGCACACGCCCGAGGATGTGAGCTTGC AGGCGCGATTCTTCGACGAAGGCACGCGCTTCTACGTCGGCTATCCCTTTCCGAGCCACCATGATGAGCGTCATCACGAC CGCACGGTGGCCGACGAGCTGAAGAATCTGCTCAAGAAAGGCTTTTTCCGCCTGCTGAAAGGGGAGAGTGTCATCGATAT TTCCGACGACAAGGAGCGCGCCGGGGTGGAGATGATGAAGCGCGCCGAGCTGTCGGAGCTGCTGGTGCTGGTGGATCGCT TCGTCGCCAAAAAGGATGAGAAGGTTTACAGCCGCGTTGCCCAGGCTGCCGAAAGCTGCTTTGCCGAGTCGGGCGGTCAG GCGGTCATCCGCGTGGCGGGCGGCAAGGAGTTCCGCTTCAGCGACCGGCTGGAGCTGAACGGTGTTACCTATCAGGAGCC GTCGCCCCAGCTTTTCGCCTTCAACTCTCCCATCGGGGCCTGTACGTCCTGCCAGGGTTTCGGGCGCATCGCCGGGATCG ACGAGGATGCGGTGGTGCCGGACAAGTCGCTCTCGTTGAAGGAGGGGGCGATTTCGTGCTGGAACTCTGAAAAGTATTCG TGGTACCGCAAGCAGTTGCTCAAGATCGCGCCGGAGGTGGGTATTCCGGTTGATGTGCCCTACGAAAAACTTGGCCGCGT ACATCGCGAGATGCTCTGGAAGGGGATTCCCGAGCGGAGCTTCAAGGGTTTGTGGCCCTTTTTCGAAGAGATCGAAAAGG ACGCGGGCTACAAAGTGCATTACCGGGTGTTCCTGAGTCGCTACCGGGGCTACGCCACCTGCCCGGAGTGCGAGGGGGCG CGGCTCAATCCCGACGCCTTGCAGGTGCGGGTTTCCGGCAAGAACATCGGCGAAGTCGTGCGCATGACCATCGCCGATGC GCAGACCTTTTTTGCCAGCCTCGACATTTCGCCTTTCGATCGCTCGGTGGCCGACTCGGTGCTGCGCGAGATCAACAAGC GGCTCGGCTACCTGATGGATGTCGGGCTTGACTACCTTACGCTCGACCGGCTGACGCACACCCTCTCCGGCGGCGAGTTT CAGCGCATCAACCTCTCGACCTCACTCGGCTCGCCGCTGGTGGGTGCGATCTACATTCTCGACGAGCCGAGCATCGGCTT GCACCAGAGTGACTCGGCGCGTCTCGTGGCGCTGCTCAAGCGGTTGCGAGACCTTGGCAACACGGTGGTGGTGGTCGAGC ACGACCGCGAAATCATCGAGGCTGCCGACGAGGTGATCGACCTCGGCCCGCGCGCCGGGCGGCTCGGCGGCGAGGTAGTC TTCCACGGTCCGCCGTCAGCAATGGCCGGGGCGGAGGGGTCGCTGACCGCCGACTACCTCAGCGGCCGCAAGCAGATCGC CGTGCCTGCGGAGCGGCGCAAGCCGGACTTTTCGCGCTGCATCGAAATTATCGGAGCGATGCAGAACAACCTGCGCAACA TCGACGTCAGGTTCCCGCTCGGCGTCATGACCTGCGTCACCGGTGTCAGCGGCTCCGGCAAATCGACACTCGTCAACGAC ATTCTCAAGCTCGGCATCATCCGTGCCAAGGAGGGATCGCGGGAGAAGGTGGGCACGCACCGGGCCATCAAGGGCGTCGA GTTCATTGAGAAGGTCGAGCATGTTGACCAGTCGCCCATCGGCAAATCGAGCCGCAGCAATCCGGCCACTTACCTCAAGA TTTTCGACGATATTCGTCAGCTCTTTGCCTCGACCCGCGAGAGCAAGTCACGCGGCTGGAAGCCTGGCTACTTCTCGTTC AACATCCCCGGCGGGCGCTGCGAAACCTGTGCAGGCGAGGGGACGGTCAAGATCGAGATGCAGTTTCTGGCCGACATCGA GGCGGTCTGCGAGGAGTGTGAGGGCAAGCGCTACAAGGCTTCGACGCTTGAGGTGAAATACAACGGGCTCTCCATCTCCG AGGTGCTCGACCTGACCGTCGAGGAGGCGATCAGCTTTTTCGGGCAGGAGAAGTCGATCCAGAAAAAACTTCAGGTGTTG CAGGAGGTGGGGCTCGAATACATCCGCCTCGGCCAGTCATCGAGCACCCTTTCCGGCGGCGAGGCGCAGCGGCTCAAACT CGCCAGCTTCATCTCGCGCTCGGACGTGAGCAATACGCTTTTCATCTTCGATGAACCCACCACCGGCCTGCACTTCGACG ACATCTCCAAGCTCGTGCGCTGCTTTGAGGAGCTGATGGCGCGCGGCAACACGCTGGTCATCATCGAGCACAACCCCGAT ATCATCAAGCAGGCCGACTGGATCATCGACCTCGGCCCCGGCGCAGGTGTGCGTGGCGGCGACATTGTTGCTGTGGGTAC GCCGGAGGAGATTGTCGCTTGCGAAGCCTCGCTCACGGGGAGGCATTTGCGGGGGTATTTGTAG
Upstream 100 bases:
>100_bases GCTTTTCATGTTATCCACCGAGCGCCCCAACGCACAACCACCGGAAACAAATATAATATCCAGTCCGGATGACGGACATG AAACCCGCCTGCCGGACATC
Downstream 100 bases:
>100_bases AAAGAAAAGGACTTCAGGGACGAAGAAACCGTTTTCACACTGTTGTCCTTCTCCTCAAATATTCATCTTCAGCGGATCAT CATCTTCAGCGGATCATCTT
Product: excinuclease ABC, subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 927; Mature: 927
Protein sequence:
>927_residues MLGGVSTHNLKHVTVRIPRNRFVVLTGLSGSGKSSLAFDTLYAEGHRRYVESLSAYVRQFLERMPKPEIETVEGIAPAIA IEQKAIPKNPRSTVGTVSEIYDYLRLLYARIGKIYSRDTGELVLKHTPEDVSLQARFFDEGTRFYVGYPFPSHHDERHHD RTVADELKNLLKKGFFRLLKGESVIDISDDKERAGVEMMKRAELSELLVLVDRFVAKKDEKVYSRVAQAAESCFAESGGQ AVIRVAGGKEFRFSDRLELNGVTYQEPSPQLFAFNSPIGACTSCQGFGRIAGIDEDAVVPDKSLSLKEGAISCWNSEKYS WYRKQLLKIAPEVGIPVDVPYEKLGRVHREMLWKGIPERSFKGLWPFFEEIEKDAGYKVHYRVFLSRYRGYATCPECEGA RLNPDALQVRVSGKNIGEVVRMTIADAQTFFASLDISPFDRSVADSVLREINKRLGYLMDVGLDYLTLDRLTHTLSGGEF QRINLSTSLGSPLVGAIYILDEPSIGLHQSDSARLVALLKRLRDLGNTVVVVEHDREIIEAADEVIDLGPRAGRLGGEVV FHGPPSAMAGAEGSLTADYLSGRKQIAVPAERRKPDFSRCIEIIGAMQNNLRNIDVRFPLGVMTCVTGVSGSGKSTLVND ILKLGIIRAKEGSREKVGTHRAIKGVEFIEKVEHVDQSPIGKSSRSNPATYLKIFDDIRQLFASTRESKSRGWKPGYFSF NIPGGRCETCAGEGTVKIEMQFLADIEAVCEECEGKRYKASTLEVKYNGLSISEVLDLTVEEAISFFGQEKSIQKKLQVL QEVGLEYIRLGQSSSTLSGGEAQRLKLASFISRSDVSNTLFIFDEPTTGLHFDDISKLVRCFEELMARGNTLVIIEHNPD IIKQADWIIDLGPGAGVRGGDIVAVGTPEEIVACEASLTGRHLRGYL
Sequences:
>Translated_927_residues MLGGVSTHNLKHVTVRIPRNRFVVLTGLSGSGKSSLAFDTLYAEGHRRYVESLSAYVRQFLERMPKPEIETVEGIAPAIA IEQKAIPKNPRSTVGTVSEIYDYLRLLYARIGKIYSRDTGELVLKHTPEDVSLQARFFDEGTRFYVGYPFPSHHDERHHD RTVADELKNLLKKGFFRLLKGESVIDISDDKERAGVEMMKRAELSELLVLVDRFVAKKDEKVYSRVAQAAESCFAESGGQ AVIRVAGGKEFRFSDRLELNGVTYQEPSPQLFAFNSPIGACTSCQGFGRIAGIDEDAVVPDKSLSLKEGAISCWNSEKYS WYRKQLLKIAPEVGIPVDVPYEKLGRVHREMLWKGIPERSFKGLWPFFEEIEKDAGYKVHYRVFLSRYRGYATCPECEGA RLNPDALQVRVSGKNIGEVVRMTIADAQTFFASLDISPFDRSVADSVLREINKRLGYLMDVGLDYLTLDRLTHTLSGGEF QRINLSTSLGSPLVGAIYILDEPSIGLHQSDSARLVALLKRLRDLGNTVVVVEHDREIIEAADEVIDLGPRAGRLGGEVV FHGPPSAMAGAEGSLTADYLSGRKQIAVPAERRKPDFSRCIEIIGAMQNNLRNIDVRFPLGVMTCVTGVSGSGKSTLVND ILKLGIIRAKEGSREKVGTHRAIKGVEFIEKVEHVDQSPIGKSSRSNPATYLKIFDDIRQLFASTRESKSRGWKPGYFSF NIPGGRCETCAGEGTVKIEMQFLADIEAVCEECEGKRYKASTLEVKYNGLSISEVLDLTVEEAISFFGQEKSIQKKLQVL QEVGLEYIRLGQSSSTLSGGEAQRLKLASFISRSDVSNTLFIFDEPTTGLHFDDISKLVRCFEELMARGNTLVIIEHNPD IIKQADWIIDLGPGAGVRGGDIVAVGTPEEIVACEASLTGRHLRGYL >Mature_927_residues MLGGVSTHNLKHVTVRIPRNRFVVLTGLSGSGKSSLAFDTLYAEGHRRYVESLSAYVRQFLERMPKPEIETVEGIAPAIA IEQKAIPKNPRSTVGTVSEIYDYLRLLYARIGKIYSRDTGELVLKHTPEDVSLQARFFDEGTRFYVGYPFPSHHDERHHD RTVADELKNLLKKGFFRLLKGESVIDISDDKERAGVEMMKRAELSELLVLVDRFVAKKDEKVYSRVAQAAESCFAESGGQ AVIRVAGGKEFRFSDRLELNGVTYQEPSPQLFAFNSPIGACTSCQGFGRIAGIDEDAVVPDKSLSLKEGAISCWNSEKYS WYRKQLLKIAPEVGIPVDVPYEKLGRVHREMLWKGIPERSFKGLWPFFEEIEKDAGYKVHYRVFLSRYRGYATCPECEGA RLNPDALQVRVSGKNIGEVVRMTIADAQTFFASLDISPFDRSVADSVLREINKRLGYLMDVGLDYLTLDRLTHTLSGGEF QRINLSTSLGSPLVGAIYILDEPSIGLHQSDSARLVALLKRLRDLGNTVVVVEHDREIIEAADEVIDLGPRAGRLGGEVV FHGPPSAMAGAEGSLTADYLSGRKQIAVPAERRKPDFSRCIEIIGAMQNNLRNIDVRFPLGVMTCVTGVSGSGKSTLVND ILKLGIIRAKEGSREKVGTHRAIKGVEFIEKVEHVDQSPIGKSSRSNPATYLKIFDDIRQLFASTRESKSRGWKPGYFSF NIPGGRCETCAGEGTVKIEMQFLADIEAVCEECEGKRYKASTLEVKYNGLSISEVLDLTVEEAISFFGQEKSIQKKLQVL QEVGLEYIRLGQSSSTLSGGEAQRLKLASFISRSDVSNTLFIFDEPTTGLHFDDISKLVRCFEELMARGNTLVIIEHNPD IIKQADWIIDLGPGAGVRGGDIVAVGTPEEIVACEASLTGRHLRGYL
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=948, Percent_Identity=44.9367088607595, Blast_Score=771, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 102801; Mature: 102801
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGGVSTHNLKHVTVRIPRNRFVVLTGLSGSGKSSLAFDTLYAEGHRRYVESLSAYVRQF CCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LERMPKPEIETVEGIAPAIAIEQKAIPKNPRSTVGTVSEIYDYLRLLYARIGKIYSRDTG HHHCCCCCCHHHHCCCHHHHEHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCC ELVLKHTPEDVSLQARFFDEGTRFYVGYPFPSHHDERHHDRTVADELKNLLKKGFFRLLK CEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC GESVIDISDDKERAGVEMMKRAELSELLVLVDRFVAKKDEKVYSRVAQAAESCFAESGGQ CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC AVIRVAGGKEFRFSDRLELNGVTYQEPSPQLFAFNSPIGACTSCQGFGRIAGIDEDAVVP EEEEEECCCCEEECCCEEECCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC DKSLSLKEGAISCWNSEKYSWYRKQLLKIAPEVGIPVDVPYEKLGRVHREMLWKGIPERS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH FKGLWPFFEEIEKDAGYKVHYRVFLSRYRGYATCPECEGARLNPDALQVRVSGKNIGEVV HCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH RMTIADAQTFFASLDISPFDRSVADSVLREINKRLGYLMDVGLDYLTLDRLTHTLSGGEF HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCE QRINLSTSLGSPLVGAIYILDEPSIGLHQSDSARLVALLKRLRDLGNTVVVVEHDREIIE EEEEECCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH AADEVIDLGPRAGRLGGEVVFHGPPSAMAGAEGSLTADYLSGRKQIAVPAERRKPDFSRC HHHHHHHCCCCCCCCCCEEEEECCCCHHCCCCCCCCHHHHCCCCEEECCHHHCCCCHHHH IEIIGAMQNNLRNIDVRFPLGVMTCVTGVSGSGKSTLVNDILKLGIIRAKEGSREKVGTH HHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCEEECCCCCCHHHHHH RAIKGVEFIEKVEHVDQSPIGKSSRSNPATYLKIFDDIRQLFASTRESKSRGWKPGYFSF HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE NIPGGRCETCAGEGTVKIEMQFLADIEAVCEECEGKRYKASTLEVKYNGLSISEVLDLTV ECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHH EEAISFFGQEKSIQKKLQVLQEVGLEYIRLGQSSSTLSGGEAQRLKLASFISRSDVSNTL HHHHHHHCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE FIFDEPTTGLHFDDISKLVRCFEELMARGNTLVIIEHNPDIIKQADWIIDLGPGAGVRGG EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCEEEECCCCCCCCCC DIVAVGTPEEIVACEASLTGRHLRGYL CEEEECCCHHHEEECCHHCCCHHCCCC >Mature Secondary Structure MLGGVSTHNLKHVTVRIPRNRFVVLTGLSGSGKSSLAFDTLYAEGHRRYVESLSAYVRQF CCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LERMPKPEIETVEGIAPAIAIEQKAIPKNPRSTVGTVSEIYDYLRLLYARIGKIYSRDTG HHHCCCCCCHHHHCCCHHHHEHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCC ELVLKHTPEDVSLQARFFDEGTRFYVGYPFPSHHDERHHDRTVADELKNLLKKGFFRLLK CEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC GESVIDISDDKERAGVEMMKRAELSELLVLVDRFVAKKDEKVYSRVAQAAESCFAESGGQ CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC AVIRVAGGKEFRFSDRLELNGVTYQEPSPQLFAFNSPIGACTSCQGFGRIAGIDEDAVVP EEEEEECCCCEEECCCEEECCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC DKSLSLKEGAISCWNSEKYSWYRKQLLKIAPEVGIPVDVPYEKLGRVHREMLWKGIPERS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH FKGLWPFFEEIEKDAGYKVHYRVFLSRYRGYATCPECEGARLNPDALQVRVSGKNIGEVV HCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH RMTIADAQTFFASLDISPFDRSVADSVLREINKRLGYLMDVGLDYLTLDRLTHTLSGGEF HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCE QRINLSTSLGSPLVGAIYILDEPSIGLHQSDSARLVALLKRLRDLGNTVVVVEHDREIIE EEEEECCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH AADEVIDLGPRAGRLGGEVVFHGPPSAMAGAEGSLTADYLSGRKQIAVPAERRKPDFSRC HHHHHHHCCCCCCCCCCEEEEECCCCHHCCCCCCCCHHHHCCCCEEECCHHHCCCCHHHH IEIIGAMQNNLRNIDVRFPLGVMTCVTGVSGSGKSTLVNDILKLGIIRAKEGSREKVGTH HHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCEEECCCCCCHHHHHH RAIKGVEFIEKVEHVDQSPIGKSSRSNPATYLKIFDDIRQLFASTRESKSRGWKPGYFSF HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE NIPGGRCETCAGEGTVKIEMQFLADIEAVCEECEGKRYKASTLEVKYNGLSISEVLDLTV ECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHH EEAISFFGQEKSIQKKLQVLQEVGLEYIRLGQSSSTLSGGEAQRLKLASFISRSDVSNTL HHHHHHHCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE FIFDEPTTGLHFDDISKLVRCFEELMARGNTLVIIEHNPDIIKQADWIIDLGPGAGVRGG EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCEEEECCCCCCCCCC DIVAVGTPEEIVACEASLTGRHLRGYL CEEEECCCHHHEEECCHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]