| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21673133
Identifier: 21673133
GI number: 21673133
Start: 305498
End: 306943
Strand: Direct
Name: 21673133
Synonym: CT0294
Alternate gene names: NA
Gene position: 305498-306943 (Clockwise)
Preceding gene: 21673132
Following gene: 21673137
Centisome position: 14.18
GC content: 53.8
Gene sequence:
>1446_bases ATGACTTGTTGCTCTGATTTTTTGAAACGTAGCGCGGTGGCGGCCGCTACCACGCTTATTTTTTCTTTGACCGTTCCTTC CGTGGCGTTTTGCGCATCCGGGGGCGGGGAGCACTCATTCCTGCCTCCGGTCTGGCTGGCAGCACCGTTCGTGGTGCTGC TTCTGATGATCGCTACCGGTCCGCTTTTCTATCCGAGATTCTGGGAACACCATTATCAGAAGGTTTCGATCGTTCTGGGT GTTCCTGTAGCGCTCTGGTACGCCTTCATGGCGGAACATGGCGGGCACATGCTTCTGCACACCCTTGAAGAGTACATCTC CTTCATCGCCCTGATATCTTCGCTTTTCGTTGTGGCTGGAGGCATCCTGATCAAAATCGAACGGCGGGGGACACCGCTGC TCAATGCGCTTTTGCTTCTGTTTGGCGCAGTGCTTGCCAATGTTGTTGGTACGACTGGTGCCTCGATGTTGCTGATCAGG CCATATCTCAGGGTTAACAAAGGACGCCTGAAGCCATTTCATATCGTTTTTTTCATCTTCATCATCAGCAATATCGGTGG TGCGCTGACACCGATCGGGGATCCGCCGCTCTTTCTCGGCTTTCTGCGCGGCGTACCATTCTTCTGGGTGATTCAGCATC TTTGGCTGCCCTGGCTGGTGACGATCGGGTTGCTTACGGCTATTTTTCTGGTGCTCGATCTGAAGGCAGGGAAGAACGAG GCCGAGCAGGAATATTCTGGCCGTATCACGTTGATCGGGCGCAGGAATTTCCTCTACCTGATTCCGCTTATCGGCTCGAT CTTTCTCGATCCTGCCGTCATTCCGGGATTTCCGAGCCTCCAGGAGATTTTTCATGTGCCTTTTGGCATCAGGGAGGTCA TCATGCTGACGATCGCGGTCGTTGCCTACAAGACGGCCAATCAGGATGCCCTCGGGGGCAACGAGTTTAACTTCGAGCCG ATCAAGGAGGTCGCGTTCCTTTTCGTGGGCATCTTCGCCACCATGATTCCTGCGCTTCAGCTGATTGGTGCGTATGCGCA GTCCCATGCAGCTGAATTTACGGTCACGAAGTTCTACTGGTTCACCGGAATTCTCTCCGGTGTACTGGATAATGCACCGA CCTACCTGAACTTTCTGGCTGGAGCGCTTGGCAAGTTTGGTCTCGATTCCAACAGCATTGCCGATGTCGTGAAGTTTTCC CGGGGCATGGACTCACCGATCGCCGGTGACGTCCCTTCGACGCTTTATCTCATGGCAATATCGGTGGGCGCGGTCTTTTT CGGCGCGTTCACCTATATCGGTAACGCTCCGAACTTCATGGTCAAGAACATCGCCGAACAGACCGAGGCCGATGTTCCCT CTTTCGTGGAGTATATTTACCGCTATTCGATTCCGGTGCTGCTGCCGGTATTCGGAATCATCTGGTTTGTGCTGTTCCAC TGGTAG
Upstream 100 bases:
>100_bases CCGATATTGGCGGCGAAAAGAAGATTCGTGAAAAAGGCTATAACATCTACTTCCTGACAGAGTTCGAAGGTGATTGATAC CGTTCGATCTCGAATGACTC
Downstream 100 bases:
>100_bases CCACGCTGTTTCCTGCCGTTCCGGACAGCAAACGGCAGGATCGAAAGCTATTAAGCGCACGGTCAGCTCTCGTCCGGCAC TCAAGACAAAAGTGACTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Arsenite-Anitmonite Efflux Pump ArsB Family; Na+ Antiporter; Na+/H+ Antiporter; Transporter Uit6 Family; Arsenite Transport Protein ArsB; NA+/H+ Antiporter Permease; Na+/H+ Antiporter NhaD-Like Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases-Like; Na+/H+ Antiporter NhaD Or Related Arsenite Permease; Signal Peptide; ArsB Family Arsenate Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases; Na+/H+ Antiporter NhaD
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MTCCSDFLKRSAVAAATTLIFSLTVPSVAFCASGGGEHSFLPPVWLAAPFVVLLLMIATGPLFYPRFWEHHYQKVSIVLG VPVALWYAFMAEHGGHMLLHTLEEYISFIALISSLFVVAGGILIKIERRGTPLLNALLLLFGAVLANVVGTTGASMLLIR PYLRVNKGRLKPFHIVFFIFIISNIGGALTPIGDPPLFLGFLRGVPFFWVIQHLWLPWLVTIGLLTAIFLVLDLKAGKNE AEQEYSGRITLIGRRNFLYLIPLIGSIFLDPAVIPGFPSLQEIFHVPFGIREVIMLTIAVVAYKTANQDALGGNEFNFEP IKEVAFLFVGIFATMIPALQLIGAYAQSHAAEFTVTKFYWFTGILSGVLDNAPTYLNFLAGALGKFGLDSNSIADVVKFS RGMDSPIAGDVPSTLYLMAISVGAVFFGAFTYIGNAPNFMVKNIAEQTEADVPSFVEYIYRYSIPVLLPVFGIIWFVLFH W
Sequences:
>Translated_481_residues MTCCSDFLKRSAVAAATTLIFSLTVPSVAFCASGGGEHSFLPPVWLAAPFVVLLLMIATGPLFYPRFWEHHYQKVSIVLG VPVALWYAFMAEHGGHMLLHTLEEYISFIALISSLFVVAGGILIKIERRGTPLLNALLLLFGAVLANVVGTTGASMLLIR PYLRVNKGRLKPFHIVFFIFIISNIGGALTPIGDPPLFLGFLRGVPFFWVIQHLWLPWLVTIGLLTAIFLVLDLKAGKNE AEQEYSGRITLIGRRNFLYLIPLIGSIFLDPAVIPGFPSLQEIFHVPFGIREVIMLTIAVVAYKTANQDALGGNEFNFEP IKEVAFLFVGIFATMIPALQLIGAYAQSHAAEFTVTKFYWFTGILSGVLDNAPTYLNFLAGALGKFGLDSNSIADVVKFS RGMDSPIAGDVPSTLYLMAISVGAVFFGAFTYIGNAPNFMVKNIAEQTEADVPSFVEYIYRYSIPVLLPVFGIIWFVLFH W >Mature_480_residues TCCSDFLKRSAVAAATTLIFSLTVPSVAFCASGGGEHSFLPPVWLAAPFVVLLLMIATGPLFYPRFWEHHYQKVSIVLGV PVALWYAFMAEHGGHMLLHTLEEYISFIALISSLFVVAGGILIKIERRGTPLLNALLLLFGAVLANVVGTTGASMLLIRP YLRVNKGRLKPFHIVFFIFIISNIGGALTPIGDPPLFLGFLRGVPFFWVIQHLWLPWLVTIGLLTAIFLVLDLKAGKNEA EQEYSGRITLIGRRNFLYLIPLIGSIFLDPAVIPGFPSLQEIFHVPFGIREVIMLTIAVVAYKTANQDALGGNEFNFEPI KEVAFLFVGIFATMIPALQLIGAYAQSHAAEFTVTKFYWFTGILSGVLDNAPTYLNFLAGALGKFGLDSNSIADVVKFSR GMDSPIAGDVPSTLYLMAISVGAVFFGAFTYIGNAPNFMVKNIAEQTEADVPSFVEYIYRYSIPVLLPVFGIIWFVLFHW
Specific function: Unknown
COG id: COG1055
COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52893; Mature: 52762
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCCSDFLKRSAVAAATTLIFSLTVPSVAFCASGGGEHSFLPPVWLAAPFVVLLLMIATG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC PLFYPRFWEHHYQKVSIVLGVPVALWYAFMAEHGGHMLLHTLEEYISFIALISSLFVVAG CCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC GILIKIERRGTPLLNALLLLFGAVLANVVGTTGASMLLIRPYLRVNKGRLKPFHIVFFIF CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH IISNIGGALTPIGDPPLFLGFLRGVPFFWVIQHLWLPWLVTIGLLTAIFLVLDLKAGKNE HHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AEQEYSGRITLIGRRNFLYLIPLIGSIFLDPAVIPGFPSLQEIFHVPFGIREVIMLTIAV HHHHHCCCEEEEECCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH VAYKTANQDALGGNEFNFEPIKEVAFLFVGIFATMIPALQLIGAYAQSHAAEFTVTKFYW HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTGILSGVLDNAPTYLNFLAGALGKFGLDSNSIADVVKFSRGMDSPIAGDVPSTLYLMAI HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH SVGAVFFGAFTYIGNAPNFMVKNIAEQTEADVPSFVEYIYRYSIPVLLPVFGIIWFVLFH HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC W C >Mature Secondary Structure TCCSDFLKRSAVAAATTLIFSLTVPSVAFCASGGGEHSFLPPVWLAAPFVVLLLMIATG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC PLFYPRFWEHHYQKVSIVLGVPVALWYAFMAEHGGHMLLHTLEEYISFIALISSLFVVAG CCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC GILIKIERRGTPLLNALLLLFGAVLANVVGTTGASMLLIRPYLRVNKGRLKPFHIVFFIF CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH IISNIGGALTPIGDPPLFLGFLRGVPFFWVIQHLWLPWLVTIGLLTAIFLVLDLKAGKNE HHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AEQEYSGRITLIGRRNFLYLIPLIGSIFLDPAVIPGFPSLQEIFHVPFGIREVIMLTIAV HHHHHCCCEEEEECCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH VAYKTANQDALGGNEFNFEPIKEVAFLFVGIFATMIPALQLIGAYAQSHAAEFTVTKFYW HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTGILSGVLDNAPTYLNFLAGALGKFGLDSNSIADVVKFSRGMDSPIAGDVPSTLYLMAI HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH SVGAVFFGAFTYIGNAPNFMVKNIAEQTEADVPSFVEYIYRYSIPVLLPVFGIIWFVLFH HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC W C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA