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The map label for this gene is yqgF [C]

Identifier: 21672923

GI number: 21672923

Start: 77774

End: 78202

Strand: Direct

Name: yqgF [C]

Synonym: CT0082

Alternate gene names: 21672923

Gene position: 77774-78202 (Clockwise)

Preceding gene: 21672922

Following gene: 21672924

Centisome position: 3.61

GC content: 58.97

Gene sequence:

>429_bases
ATGTCTTCATCCAGCCACAAGCGCATCATCGGAATCGATTTCGGCACCAAGCGGATCGGAGTGGCGCTGAGCGATCCGTT
GCGGATGTTCGCGCAGCCTCTTGGTACGTTCGATATGGAGGGGCTCGTCAGGGTGCTGTCGAGGGTACGGGACGATGAGG
GAATCGAGCTGGTCGTGGTTGGCTATCCGATGAGCGACAAGGGTGAAGAGAACCGCATGACCGGCGTGATCGACCGTTTC
GTCGCGGAGCTTCGGGAGTCGTTTCCGGGCACTTTGATCGAGACTTTCGATGAGCACCGCTCGTCACGCACGGCGATGAA
AATCCTGGCCGCTTCGGGAAGCAGCCGGAAGAAACGCAACGAGAAAGGACGGCTCGACACCGCCGCAGCCTGCCTGATTC
TGCAAGGATACCTCGATAGCCATTCCTGA

Upstream 100 bases:

>100_bases
CCGGGTGTTTTTACCAATGTTCAGAGCACATCGACTCCTGATCCATACAGCGTCTGAACCTTTCAGTTCAGACGCTGCAG
AGGCTCAACCAGCGACAACC

Downstream 100 bases:

>100_bases
GCGCACCAACACCGTGCGTCAAGGGATTTTAGGTTTAACATTTCACACGGGCTTCTGTATCTTTATCGTTAGGTGTCTGG
TGTTTGCGGATACCCGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRDDEGIELVVVGYPMSDKGEENRMTGVIDRF
VAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRNEKGRLDTAAACLILQGYLDSHS

Sequences:

>Translated_142_residues
MSSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRDDEGIELVVVGYPMSDKGEENRMTGVIDRF
VAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRNEKGRLDTAAACLILQGYLDSHS
>Mature_141_residues
SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRDDEGIELVVVGYPMSDKGEENRMTGVIDRFV
AELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRNEKGRLDTAAACLILQGYLDSHS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CHLTE (Q8KG86)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_660988.1
- ProteinModelPortal:   Q8KG86
- SMR:   Q8KG86
- GeneID:   1006503
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT0082
- NMPDR:   fig|194439.1.peg.82
- TIGR:   CT0082
- HOGENOM:   HBG607919
- OMA:   FAQPVGT
- ProtClustDB:   CLSK637149
- BioCyc:   CTEP194439:CT_0082-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15705; Mature: 15574

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRDDEGIELVVV
CCCCCCCEEEEECCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEE
GYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRN
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
EKGRLDTAAACLILQGYLDSHS
CCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRDDEGIELVVV
CCCCCCEEEEECCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEE
GYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRN
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
EKGRLDTAAACLILQGYLDSHS
CCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901