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The map label for this gene is ychF [C]

Identifier: 161777474

GI number: 161777474

Start: 630846

End: 632051

Strand: Direct

Name: ychF [C]

Synonym: SSO0743

Alternate gene names: 161777474

Gene position: 630846-632051 (Clockwise)

Preceding gene: 15897628

Following gene: 15897655

Centisome position: 21.08

GC content: 35.41

Gene sequence:

>1206_bases
ATGATTACCATTGGAATTATAGGAAAGACCAATGTGGGTAAAAGTACGTTTTTTGCAGCAGCAACGCTAAAAGATGTGGA
AATAGCTAATAGACCATTTGTAACTATAAATCCAAATGAAGGCATAGGATATGTAAAAGTAAAATGCGCTCATACTGAAT
TCAATGTGAAGTGTAATCCAAAAAATTCTATATGTATTGAAGATTACAGATTCATACCAGTAAAACTAGTAGATGTAGCT
GGATTAATACCTGGCGCTCATGAAGGAAGAGGATTAGGAAATAAATTCTTGGATGATTTACGTCAAGCTGATGCACTAAT
ACACGTAATCGACGCAAGTGGGTCCACAAATGAAGAGGGCGTCCCAGTAGAGCCCGGATCTAGAGACCCTGAAGAGGATA
TAAAATTTATAGAAAGTGAGCTAGATGAATGGTTTTATTCAATTATTAATAAAGATTGGGCTAAATTTGCCAGAACATCA
GATTTATCTGGAAAAGATCTAGTAGACGCGTTATTAAGCAAACTATCCGGAGTATCTGTAAATAGATCACACATTATTGA
GACTTTAAAAGTTACAAAATTGGAAAACCTAAAATTAATGCAGTGGACGGAACAAGATCTAAGAGTATTTGCTAAAACTT
TACGATCAGTAAGTAAACCTATGATAATTGCTGCGAACAAGAGCGATCTACCGCAAGCTAGAAATAACATTAGGAGATTA
AAAGAGAAATACAAGTGGGCTATTCCAACTAGTGCAGCATCAGAAATGGCTCTACGGAAAGCCGCAAAAGCTGGAATAAT
ATCTTACATTCCCGGAGATAGTGATTTTACCATACTTAAACCATTAAACGAGAAACAAAAGAGCGCTCTAGAATATATTA
GAACTAGTGTACTACAAGTATATGGAAGCACTGGAGTTCAGCAAGCAATAAATACAGCAATCTTTGATGCGTTAAACATG
ATTGTAACATATCCAGTTGAAGATGAGAGAAAACTAACTGACAAAAATGGAAATGTTTTGCCAGACGCAATACTCTTAAA
GAAAGGGTCTACTCCAAAAGATTTAGCTAATGCCATACATACGGAACTAGCTAAAGGTTTCTTATACGCTATTGATGTGA
AAAGAAAAATGAGAGTGGGAGAGAATTATCAACTACAGAATAATGATGTAATAAAGATTGTTTCAAGTACCGCTAGACCT
TCTTAG

Upstream 100 bases:

>100_bases
CCATGTATTCTCTATATAGTGATACATTGATAATGCCATCTATTCTCAAAATACTATGCTAAGCATCTAATTAATAAATG
TGTCCACTAAATCAGAACAT

Downstream 100 bases:

>100_bases
GTAATATGGAACATATTTCTCTCCTTTCTCAACATCTCTATCAACAACAGCTCCTGGATAAATCCAAGCATATGCACCAA
TCTTTACCCCAGGCAATATT

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MITIGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNPKNSICIEDYRFIPVKLVDVA
GLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEGVPVEPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTS
DLSGKDLVDALLSKLSGVSVNRSHIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRL
KEKYKWAIPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQVYGSTGVQQAINTAIFDALNM
IVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIHTELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSSTARP
S

Sequences:

>Translated_401_residues
MITIGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNPKNSICIEDYRFIPVKLVDVA
GLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEGVPVEPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTS
DLSGKDLVDALLSKLSGVSVNRSHIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRL
KEKYKWAIPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQVYGSTGVQQAINTAIFDALNM
IVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIHTELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSSTARP
S
>Mature_401_residues
MITIGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNPKNSICIEDYRFIPVKLVDVA
GLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEGVPVEPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTS
DLSGKDLVDALLSKLSGVSVNRSHIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRL
KEKYKWAIPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQVYGSTGVQQAINTAIFDALNM
IVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIHTELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSSTARP
S

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=420, Percent_Identity=28.3333333333333, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI1787454, Length=139, Percent_Identity=37.410071942446, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789574, Length=154, Percent_Identity=29.8701298701299, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=424, Percent_Identity=27.122641509434, Blast_Score=94, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321649, Length=369, Percent_Identity=38.2113821138211, Blast_Score=226, Evalue=5e-60,
Organism=Saccharomyces cerevisiae, GI6321773, Length=433, Percent_Identity=24.4803695150115, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6319499, Length=419, Percent_Identity=26.0143198090692, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24640873, Length=422, Percent_Identity=27.4881516587678, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24640877, Length=422, Percent_Identity=27.4881516587678, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24640875, Length=422, Percent_Identity=27.4881516587678, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24640879, Length=348, Percent_Identity=25.5747126436782, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 44406; Mature: 44406

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNP
CEEEEEECCCCCCCHHEEEHHHHHHHEECCCCEEEECCCCCCEEEEEEEEEEEEEEEECC
KNSICIEDYRFIPVKLVDVAGLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEG
CCCEEEECCEEEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCC
VPVEPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTSDLSGKDLVDALLSKLSGVSV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
NRSHIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
KEKYKWAIPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQV
HHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
YGSTGVQQAINTAIFDALNMIVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIH
HCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCCCHHEEECCCCHHHHHHHHH
TELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSSTARPS
HHHHHCEEEEEEHHHHHHCCCCEEECCCCEEEEEECCCCCC
>Mature Secondary Structure
MITIGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNP
CEEEEEECCCCCCCHHEEEHHHHHHHEECCCCEEEECCCCCCEEEEEEEEEEEEEEEECC
KNSICIEDYRFIPVKLVDVAGLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEG
CCCEEEECCEEEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCC
VPVEPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTSDLSGKDLVDALLSKLSGVSV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
NRSHIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
KEKYKWAIPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQV
HHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
YGSTGVQQAINTAIFDALNMIVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIH
HCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCCCHHEEECCCCHHHHHHHHH
TELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSSTARPS
HHHHHCEEEEEEHHHHHHCCCCEEECCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]