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The map label for this gene is glcF [H]

Identifier: 15899866

GI number: 15899866

Start: 2910849

End: 2911883

Strand: Reverse

Name: glcF [H]

Synonym: SSO3161

Alternate gene names: 15899866

Gene position: 2911883-2910849 (Counterclockwise)

Preceding gene: 15899867

Following gene: 15899862

Centisome position: 97.31

GC content: 37.49

Gene sequence:

>1035_bases
ATGATCTCGTCCTTAAAATTAACTGAAATGTGTACCCACTGTGGATTTTGTCTAGAAACTTGCCCAACGTACGTTGTAAC
TAGAAATGAAGTGCACTCACCGAGGGGTAGAATAGAGGCAGTGAGGATTGGAATAAATAGTACCGGATTCGAGACGTGCA
TGTATTGTAGATTGTGCGAAACTGCTTGCCCAGCGGGTGTGAAATACGCCCAAATCATTACGCCGGTTAGGAAGAGTTCT
CTAAAGAAAACCGTAATGGAAAAAATGTTGGAGAATCCAAAGTTATTAGCCAAATCGTTAAAGTTATTAAGCAAGGCGAA
TAGTTATCCAGAAGTACAGAGGTTTGTGAAATTCGTTAAACCTAATGAAGTCTCAGAACCATTGGAAACTGATGGAGAAG
GGGACATAATACTATTCCCTGGTTGTATAGAATCAGTTATCTTTAGGAAAACTGTTGAGAAGGCTTACAAATATTTAGGT
AAAAAATACAAGGTAAAGATTATTAATGGTTGTTGTGGGCTAGCTCACATAAGCAACGGAAATTATGAAGGGGCTAAAAA
GTTAGCAATTAGACTTGCTGAAAAAGTGAAGGGTAAAAAAGTTATAACGCTGCAGTCTAATTGTGCAGCATTTATGAAGG
AGTATAAGGAATGGTTTGGTATAGAAATTAACGCATATGATTTTGCTGAATTTCTAATAAAGGAAGGCATTGAACTACCT
AAGGTTAACGATACATTTACTGTTCACTATCCTTGTCATGCCTATAGACAAAAGCTAGTTTCACATATTCGTAATGTTGC
TGAGAAAATGGGAATTAAAATAAGGGAGATGGAGGATCCACATTTCGAGTGTGGTGCTGGTGGTGATTATTGGTTATCTC
ATCCTAAGCTATCTGATATGGTAATGAACGTTAAGAGGGGTAAGATAGCCAAAAGCGAAGCTAAAAAGGTTATTGTAACT
AATAGTGTCTGTGCATTAGCCATAAGGTCAATGGGTTATGACGTATACCATATTGCTGATTTATTGGATACCTAG

Upstream 100 bases:

>100_bases
CCAAGAGGCTTCTAAATCCGTGTAAGTTGATTCCTCCAGCTAAAAATGAAATATGCAACACGGTAAATAGGATACATACT
TACTTATTAGAGGGAGATAT

Downstream 100 bases:

>100_bases
TAAATTCCACTTCTCGTTAGAATATTTTTCTTTGTAAAGTTTATTAGATAATTTTATCTCCTTCGGAGTCAGACTTCCCA
TAAATACGTCTATTTCATTT

Product: glycolate oxidase iron-sulfur subunit. (glcF)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MISSLKLTEMCTHCGFCLETCPTYVVTRNEVHSPRGRIEAVRIGINSTGFETCMYCRLCETACPAGVKYAQIITPVRKSS
LKKTVMEKMLENPKLLAKSLKLLSKANSYPEVQRFVKFVKPNEVSEPLETDGEGDIILFPGCIESVIFRKTVEKAYKYLG
KKYKVKIINGCCGLAHISNGNYEGAKKLAIRLAEKVKGKKVITLQSNCAAFMKEYKEWFGIEINAYDFAEFLIKEGIELP
KVNDTFTVHYPCHAYRQKLVSHIRNVAEKMGIKIREMEDPHFECGAGGDYWLSHPKLSDMVMNVKRGKIAKSEAKKVIVT
NSVCALAIRSMGYDVYHIADLLDT

Sequences:

>Translated_344_residues
MISSLKLTEMCTHCGFCLETCPTYVVTRNEVHSPRGRIEAVRIGINSTGFETCMYCRLCETACPAGVKYAQIITPVRKSS
LKKTVMEKMLENPKLLAKSLKLLSKANSYPEVQRFVKFVKPNEVSEPLETDGEGDIILFPGCIESVIFRKTVEKAYKYLG
KKYKVKIINGCCGLAHISNGNYEGAKKLAIRLAEKVKGKKVITLQSNCAAFMKEYKEWFGIEINAYDFAEFLIKEGIELP
KVNDTFTVHYPCHAYRQKLVSHIRNVAEKMGIKIREMEDPHFECGAGGDYWLSHPKLSDMVMNVKRGKIAKSEAKKVIVT
NSVCALAIRSMGYDVYHIADLLDT
>Mature_344_residues
MISSLKLTEMCTHCGFCLETCPTYVVTRNEVHSPRGRIEAVRIGINSTGFETCMYCRLCETACPAGVKYAQIITPVRKSS
LKKTVMEKMLENPKLLAKSLKLLSKANSYPEVQRFVKFVKPNEVSEPLETDGEGDIILFPGCIESVIFRKTVEKAYKYLG
KKYKVKIINGCCGLAHISNGNYEGAKKLAIRLAEKVKGKKVITLQSNCAAFMKEYKEWFGIEINAYDFAEFLIKEGIELP
KVNDTFTVHYPCHAYRQKLVSHIRNVAEKMGIKIREMEDPHFECGAGGDYWLSHPKLSDMVMNVKRGKIAKSEAKKVIVT
NSVCALAIRSMGYDVYHIADLLDT

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=372, Percent_Identity=23.6559139784946, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 38750; Mature: 38750

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSLKLTEMCTHCGFCLETCPTYVVTRNEVHSPRGRIEAVRIGINSTGFETCMYCRLCE
CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
TACPAGVKYAQIITPVRKSSLKKTVMEKMLENPKLLAKSLKLLSKANSYPEVQRFVKFVK
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PNEVSEPLETDGEGDIILFPGCIESVIFRKTVEKAYKYLGKKYKVKIINGCCGLAHISNG
CCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEECCCC
NYEGAKKLAIRLAEKVKGKKVITLQSNCAAFMKEYKEWFGIEINAYDFAEFLIKEGIELP
CCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCCCC
KVNDTFTVHYPCHAYRQKLVSHIRNVAEKMGIKIREMEDPHFECGAGGDYWLSHPKLSDM
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
VMNVKRGKIAKSEAKKVIVTNSVCALAIRSMGYDVYHIADLLDT
HHHHHCCCCCHHHCCEEEEECHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MISSLKLTEMCTHCGFCLETCPTYVVTRNEVHSPRGRIEAVRIGINSTGFETCMYCRLCE
CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
TACPAGVKYAQIITPVRKSSLKKTVMEKMLENPKLLAKSLKLLSKANSYPEVQRFVKFVK
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PNEVSEPLETDGEGDIILFPGCIESVIFRKTVEKAYKYLGKKYKVKIINGCCGLAHISNG
CCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEECCCC
NYEGAKKLAIRLAEKVKGKKVITLQSNCAAFMKEYKEWFGIEINAYDFAEFLIKEGIELP
CCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCCCC
KVNDTFTVHYPCHAYRQKLVSHIRNVAEKMGIKIREMEDPHFECGAGGDYWLSHPKLSDM
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
VMNVKRGKIAKSEAKKVIVTNSVCALAIRSMGYDVYHIADLLDT
HHHHHCCCCCHHHCCEEEEECHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606183; 9278503 [H]