Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 15899859

GI number: 15899859

Start: 2905605

End: 2906876

Strand: Reverse

Name: ydcM [C]

Synonym: SSO3153

Alternate gene names: 15899859

Gene position: 2906876-2905605 (Counterclockwise)

Preceding gene: 15899860

Following gene: 15899856

Centisome position: 97.15

GC content: 43.55

Gene sequence:

>1272_bases
GTGCTGAAGAACTTAAGAATTAGAAAATTTGAACCGGAAGAGGAATACGTGTACTTCACGTACTCCATCAAGAACGACAA
GAGGGAGAAGAGCAAAGAGTTAATTAAAGAATACGGAACACTACTACAGAAAGCAATTGACTACTTGTGGAGTTTAACGA
AAATACAAGTAAGAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAAGGAGGTGTATAAACCACTTAGGGAAGAG
TTGGAGAAGATCAATCACCTCGCGTCACACTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTGGAG
GAAAAGGGCTATAAAGGGGAGAGCTTCGATTGAAAAACCAGGGGTGAAGAATGCTTACGTTAGGATAAAGACGACTCTGA
GGAAGGTTGTGGGGGAAAGCGTTAGAATAACTGTAAGACCTTATGAGTACATCACCTTCTCGTGGAGTAACTTGTGGTTC
TCAAGAAGGGTTAGGGAGTTGGAACTTGGTGAACCGATAATTAAGGAGGAGAAAGTGTATTTGCCATTTCGTTACAAGTT
ACCTTGGGCAACACCATTAAACTTCTTGGCCATTGACTCCAACTTATACACGTTAGACGCTTACGACGGAGAGAAGTTCA
TTACAATCTCACTAAAGCAGTTGTACTCCCTTAAGTACTCCATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCATCA
AAGCACACGAAGAGGGGGAGAGAGTTGTTAAGGAAGTATTCGCATAGGGAGAGGAATCGCGTTCTGGACTTCGTTCGTAA
ATTTGTAAATGCGTTACTAGACCTATATCCCATGACGTTTTTCGCTGTGGAAAAGCTTAGCAAAGAGAGTATGTTTAAGG
ATGCTAATGGCTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGGGGAGTATACATAGAGTGTTGAAGTACAAGGCTCCG
CTTTACGGTTCTTTCGTTAAGGAAGTGAACCCACACTTTACATCTAGGTCTTGCCCCAGATGTGGGTTTGTATCCCGAAA
GGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTCAAGTTGGATAGGCAATTGAACGCGTCACTGAATATTTATCTCA
AGATGTGCGGATTCCCTCACATCCGTGATATTCCGCGGGTGTGGGTTGGGGTTATTCCGCTAATGGGGCGGAGAGGGATG
AACGGGTTTCCCCGTGACTTTGGTGAAGCCCAAGGGCTGAGGATTGATATTAAATATCATGAAATCCCATGA

Upstream 100 bases:

>100_bases
AAAGAGGAAGAACTGGTTGAAGACTTAGTCTCAATACTAGTCTCATTCAGTGGGAAACTCTATGGCATGAGGAGTCATAA
ATACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCTATAATACTTAGTATTGAAAGTATACACTACTGTTTCCAGAAATTTGTTACACTTTATAATTCATTAA
TAAGTTTCTTATAAATAGTG

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIKEYGTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLREE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPGVKNAYVRIKTTLRKVVGESVRITVRPYEYITFSWSNLWF
SRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANGSLSRKISRTVWGSIHRVLKYKAP
LYGSFVKEVNPHFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP

Sequences:

>Translated_423_residues
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIKEYGTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLREE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPGVKNAYVRIKTTLRKVVGESVRITVRPYEYITFSWSNLWF
SRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANGSLSRKISRTVWGSIHRVLKYKAP
LYGSFVKEVNPHFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP
>Mature_423_residues
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIKEYGTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLREE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPGVKNAYVRIKTTLRKVVGESVRITVRPYEYITFSWSNLWF
SRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANGSLSRKISRTVWGSIHRVLKYKAP
LYGSFVKEVNPHFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 49978; Mature: 49978

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIKEYGTLLQKAIDYLWSLTKIQVRKN
CCCCCCCEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKP
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GVKNAYVRIKTTLRKVVGESVRITVRPYEYITFSWSNLWFSRRVRELELGEPIIKEEKVY
CCCCHHHHHHHHHHHHCCCCEEEEEECEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEE
LPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFAS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
KHTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANGSLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RKISRTVWGSIHRVLKYKAPLYGSFVKEVNPHFTSRSCPRCGFVSRKVGKTFECERCGFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCC
LDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIKYH
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
EIP
CCC
>Mature Secondary Structure
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIKEYGTLLQKAIDYLWSLTKIQVRKN
CCCCCCCEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKP
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GVKNAYVRIKTTLRKVVGESVRITVRPYEYITFSWSNLWFSRRVRELELGEPIIKEEKVY
CCCCHHHHHHHHHHHHCCCCEEEEEECEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEE
LPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFAS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
KHTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANGSLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RKISRTVWGSIHRVLKYKAPLYGSFVKEVNPHFTSRSCPRCGFVSRKVGKTFECERCGFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCC
LDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIKYH
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
EIP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]