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The map label for this gene is yfdE [H]

Identifier: 15899847

GI number: 15899847

Start: 2893927

End: 2895045

Strand: Direct

Name: yfdE [H]

Synonym: SSO3144

Alternate gene names: 15899847

Gene position: 2893927-2895045 (Clockwise)

Preceding gene: 15899845

Following gene: 15899850

Centisome position: 96.71

GC content: 36.73

Gene sequence:

>1119_bases
ATGGATAAAATTAGGGTTATCGAACTAGGGAGTAACATTTCCGCACCTTTAGTTGGTACCATATTGGCTGACTTAGGAGC
TGAAGTAATTAAGGTTGAACCACCACCTTACGGTGATGATAGGAGGAGAGTTAAGCCTGAAATAAACGGAATTAGTGTAT
ATTTTGCGAGTACGAACAGAGGTAAGAAGAGTGTGGTAATTAACTTGAAGAGTGATGAGGGTTATGAGATCTTCCAAAGG
CTAGTTAAAACTGCAGATGTTATAGTTACTAACTATAGGCCTTCCGCATTAAAGAGGCTTAAGGTTGACTACGAGAGTGT
CAAGAGGATTAATCCTAAAATAATTTATTGTTCAATAACCGGTTTCGGTAATTTAACTGAAGAGGCTGATAGACCAGCTT
ACGATCCTATCATACTGGCGTTAAGTGGTTTAATGGACATGACTGGTGAGGAAAATCCGGTGAAGTTTGCCACTTCAATT
TCAGATATTACCACTGGGTTACTTGCAACTGTGATGATACTATGGGCTTTAAATAAAGGAGGGCCAACATTTATTGACGT
CCCAATGATATATACTCAATTTTATTTAACCTTAGAGGACGCTTATATGTATTTAAATACTGGGAAAGTTCCTAAAAGGA
TGGGTTCTGCACATAGATACCTAGTACCTTATCAAGCGTTTAAGGTTGTTGATGGTTATATATACGTTGCAGTATTCAAT
GATGAGCAATATCTAAAGCTTTGTAAGGCGTTAAATAGGGAGGACTTATGTAAATTTGACACGTTACAGAAGAGGGTTGA
AAATAGGGATTATTTAATAAAAGAATTGGGGAAAATTTTTGAGAAGAATACTAGAGATTATTGGGTAGATTTATTAAGTA
AGGCTGATGTACCAGTTGCCCCAGTATTAAGCCTAGAACAAGCGTTTAAAAAGTATGGTAATAGGTTGGTTTATGAGATT
GAGGGCGTTAAGTATATTGATTTCCCCATAAACATAACGTCAAATAAGAGTAAAGCACCTAGACTTGGCGAGAATACTAA
AGAGGTTTTACTTGAGTTAGGGTATTCGGAAGGGGAGATAAATAGACTTGCTGAAAAGGGGATAATAATGCTAATATGA

Upstream 100 bases:

>100_bases
TGTATTAGTAAGGTAAATAAACTAATAAATTTTCTAAAGGAGAGATGTTCGAAATCTGCTTGAGATAGTCTTATTTATCC
TTAATTTTCTAACGTAAGAT

Downstream 100 bases:

>100_bases
TTTAGGAAGGCCCAGTATATGATGAGCAATGTAAGCTAGGATTAAGTTTTGCGATATTGGGGCTACCTTATATAATCTGG
TCTCTCTAAGTTTTCTCTCT

Product: carnitine dehydratase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MDKIRVIELGSNISAPLVGTILADLGAEVIKVEPPPYGDDRRRVKPEINGISVYFASTNRGKKSVVINLKSDEGYEIFQR
LVKTADVIVTNYRPSALKRLKVDYESVKRINPKIIYCSITGFGNLTEEADRPAYDPIILALSGLMDMTGEENPVKFATSI
SDITTGLLATVMILWALNKGGPTFIDVPMIYTQFYLTLEDAYMYLNTGKVPKRMGSAHRYLVPYQAFKVVDGYIYVAVFN
DEQYLKLCKALNREDLCKFDTLQKRVENRDYLIKELGKIFEKNTRDYWVDLLSKADVPVAPVLSLEQAFKKYGNRLVYEI
EGVKYIDFPINITSNKSKAPRLGENTKEVLLELGYSEGEINRLAEKGIIMLI

Sequences:

>Translated_372_residues
MDKIRVIELGSNISAPLVGTILADLGAEVIKVEPPPYGDDRRRVKPEINGISVYFASTNRGKKSVVINLKSDEGYEIFQR
LVKTADVIVTNYRPSALKRLKVDYESVKRINPKIIYCSITGFGNLTEEADRPAYDPIILALSGLMDMTGEENPVKFATSI
SDITTGLLATVMILWALNKGGPTFIDVPMIYTQFYLTLEDAYMYLNTGKVPKRMGSAHRYLVPYQAFKVVDGYIYVAVFN
DEQYLKLCKALNREDLCKFDTLQKRVENRDYLIKELGKIFEKNTRDYWVDLLSKADVPVAPVLSLEQAFKKYGNRLVYEI
EGVKYIDFPINITSNKSKAPRLGENTKEVLLELGYSEGEINRLAEKGIIMLI
>Mature_372_residues
MDKIRVIELGSNISAPLVGTILADLGAEVIKVEPPPYGDDRRRVKPEINGISVYFASTNRGKKSVVINLKSDEGYEIFQR
LVKTADVIVTNYRPSALKRLKVDYESVKRINPKIIYCSITGFGNLTEEADRPAYDPIILALSGLMDMTGEENPVKFATSI
SDITTGLLATVMILWALNKGGPTFIDVPMIYTQFYLTLEDAYMYLNTGKVPKRMGSAHRYLVPYQAFKVVDGYIYVAVFN
DEQYLKLCKALNREDLCKFDTLQKRVENRDYLIKELGKIFEKNTRDYWVDLLSKADVPVAPVLSLEQAFKKYGNRLVYEI
EGVKYIDFPINITSNKSKAPRLGENTKEVLLELGYSEGEINRLAEKGIIMLI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=36.4556962025316, Blast_Score=228, Evalue=6e-60,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=34.4418052256532, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI300863126, Length=389, Percent_Identity=33.6760925449871, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=31.5914489311164, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI42794625, Length=392, Percent_Identity=26.530612244898, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI266456254, Length=392, Percent_Identity=26.530612244898, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI266458393, Length=285, Percent_Identity=26.3157894736842, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458397, Length=204, Percent_Identity=29.9019607843137, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=31.4685314685315, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=31.4685314685315, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI87082093, Length=347, Percent_Identity=33.1412103746398, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1788717, Length=170, Percent_Identity=32.3529411764706, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=26.8844221105528, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=319, Percent_Identity=25.0783699059561, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=332, Percent_Identity=24.3975903614458, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=36.9620253164557, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24585488, Length=387, Percent_Identity=24.5478036175711, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42074; Mature: 42074

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIRVIELGSNISAPLVGTILADLGAEVIKVEPPPYGDDRRRVKPEINGISVYFASTNR
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
GKKSVVINLKSDEGYEIFQRLVKTADVIVTNYRPSALKRLKVDYESVKRINPKIIYCSIT
CCEEEEEEEECCCCHHHHHHHHHHHHEEEECCCHHHHHHHHCCHHHHHCCCCEEEEEEEC
GFGNLTEEADRPAYDPIILALSGLMDMTGEENPVKFATSISDITTGLLATVMILWALNKG
CCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC
GPTFIDVPMIYTQFYLTLEDAYMYLNTGKVPKRMGSAHRYLVPYQAFKVVDGYIYVAVFN
CCCEEEHHHHHHHHEEEEEEEEEEEECCCCHHHHCCCCEEECCHHHHEEECCEEEEEEEC
DEQYLKLCKALNREDLCKFDTLQKRVENRDYLIKELGKIFEKNTRDYWVDLLSKADVPVA
CHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCH
PVLSLEQAFKKYGNRLVYEIEGVKYIDFPINITSNKSKAPRLGENTKEVLLELGYSEGEI
HHHHHHHHHHHHCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHH
NRLAEKGIIMLI
HHHHHCCEEEEC
>Mature Secondary Structure
MDKIRVIELGSNISAPLVGTILADLGAEVIKVEPPPYGDDRRRVKPEINGISVYFASTNR
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
GKKSVVINLKSDEGYEIFQRLVKTADVIVTNYRPSALKRLKVDYESVKRINPKIIYCSIT
CCEEEEEEEECCCCHHHHHHHHHHHHEEEECCCHHHHHHHHCCHHHHHCCCCEEEEEEEC
GFGNLTEEADRPAYDPIILALSGLMDMTGEENPVKFATSISDITTGLLATVMILWALNKG
CCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC
GPTFIDVPMIYTQFYLTLEDAYMYLNTGKVPKRMGSAHRYLVPYQAFKVVDGYIYVAVFN
CCCEEEHHHHHHHHEEEEEEEEEEEECCCCHHHHCCCCEEECCHHHHEEECCEEEEEEEC
DEQYLKLCKALNREDLCKFDTLQKRVENRDYLIKELGKIFEKNTRDYWVDLLSKADVPVA
CHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCH
PVLSLEQAFKKYGNRLVYEIEGVKYIDFPINITSNKSKAPRLGENTKEVLLELGYSEGEI
HHHHHHHHHHHHCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHH
NRLAEKGIIMLI
HHHHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]