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The map label for this gene is xylS

Identifier: 15899728

GI number: 15899728

Start: 2769914

End: 2772109

Strand: Reverse

Name: xylS

Synonym: SSO3022

Alternate gene names: 15899728

Gene position: 2772109-2769914 (Counterclockwise)

Preceding gene: 15899732

Following gene: 15899727

Centisome position: 92.64

GC content: 38.62

Gene sequence:

>2196_bases
ATGAGAATAGGGAATTTAAATGTGGAAATAGAATTTATCGCAGATAATATTGTTAGAGTTTTATACTATTATGGAAGGGA
AGCCATAGTAGATAATAGTCTAGTTGTGTTACCAAACCTAGAGAAGCTAAGCATTAAAGGGGAAAGTACGGGTCCATCTA
TAATCTCTTTCTCCAGCGAATCTCTCAGTGTAGATATAAACACTTCTAACGGAGAGTTAATAATGAAGGACAACAAGGGG
GGAATTGTCGTTAAGGAGAAAAGAAGGGATTTGAAATTTAACGAGGAGTTATCAACTTACAACGTTGAACAAGAGTTTGA
GTTGAGTGAGGGTGAGAGAGTATATGGCCTGGGACAACATGCAGGTGGAAATGGTTTAGGTCAATCCTCAGCCTACAAGT
TAGACTATAGCGGTCTTTCGACTACATTATCTCAGAGAAATACTGATATCGGTATTCCATTCATAGTTTCAAGCAAGGGC
TATGGAATATTGTGGGATAACTATTCCCTAGGATCGATAAGTCTTAGGAGGAATAAATTAAAGGTTTGGTTTGAAGCTGG
TAAAAAGATAGACTATTACGTAATTTACGGTGATTCCATAGATGATGTAATAAAAGGTTATAGGAAGTTAACTGGAGACG
CTCCTCTTTTACCTAAATGGGCTTATGGGTATTGGCAGAGTAAAGAGAGATATAAATCACAAGATGAAATAACAAGTGTG
GTTAAGGAGTTTAGAGAGAGGAAAATACCCTTAGACGTAATAGTACTCGACTGGAGATATTGGGGGAAGTACGGGTGGAA
CGCTTTCAAATTTGATGAGACAGATTTCCCAAGACCTAAAGATATGGTTGAGGAGATCCATAAAATGGGAGCTAAGTTGG
CAATATCAATATGGCCTACTTTTGGGAAGGAGACTGAAGTGTTTAAGGATATGGAAAGTAAAGGGTGTATAATTCTGGGG
ACTACAGCGTTTAATCCCTTTAAGGATGAATGCAGAGAGCTCTTTTGGAGTTACGTTAAGGGGTTTTACGATTTAGGGAT
AGACGCTTATTGGCTAGATGCCTCAGAGCCAGAAACTGGGCTTGGTTTAGTCTTCTTTTCCCCAATTCACGATGTGGATT
TAGAAATTGGAAAAGGGTATGAATATTTGAACGCATATCCCTTAATGGAAACTAAGGCTGTGTATGAAGGACAGAGGAGA
ATTAGCAATAAAAGGGTTGTAATATTGACCAGATCTGCCTTCGCCGGTCAACAGAGGCATTCTGCAATTAGTTGGTCTGG
TGATGTACTGGGTGATTGGGCTACGTTAAGAGCTCAAATCCCCGCTGGGCTCAATTTTTCAATTTCTGGTATACCTTACT
GGACTACTGACACCGGTGGCTTCTTCTCTGGAAACCCAGAAACTAAGGCATATGCAGAGATTTTCGTTAGGTGGTTCCAA
TGGAGCACGTTTTGTCCCATACTCAGAGTTCACGGTACAATATTTCCAAAAGAACCTTGGAGATTTCCAAGAGAGTACCA
GGAAGTTATCCTTAAATATATAAGGTTGAGATACAAATTACTGCCTTATATTTACTCATTAGCTTGGATGACATATAGTA
TCGGATATACGATTATGAGGCCACTAGTTATGGATTTTAGGGATGATCAGAACGTTTACGATTTTGATGAGCAATACATG
TTTGGTCCTTACATATTGATATCCCCAGTGACCTTGCCGAGTATTATAGAGAAAGAGGTTTACTTACCCTCTAAAGAATA
TTGGTATGATTTCTGGACTGGTGAGAAGTTAGAAGGCGGGAGGATGATGGACGTAAAGGTAACGTTAGATACCATACCCT
TATTCGTAAGAAGTGGTGCTGTCTTACCATTATTGGGAAAAAATGTAAATAACGCTGAAGAGTATTGGGATGTAATTGAC
TTAAGGGTTTATCCAGGTAAGAACGGTTATTTCGAGTTATATGACGATGATGGGATTACGTATGAGTATGAAAAAGGAAA
ATATTATATAATACCAATTACTTGGGATGAAGATAAGCAAGAGCTCACTATAGGAAAGAAAAGAGGAGAGTTAGAGATGA
GTAAGAAAATAATTAAGATTATCTGGGTTGAAAAGGGTAAGGGTATTGAGCACACGAAGCCAGATGTCGAAATAGAATAT
AACGGTAAGGAAACTATTACAGTTAAGAGGGGTTAG

Upstream 100 bases:

>100_bases
TTAAACGAATAATTTATAAACTTTTTGTACAATTCTGAAGCAATCCACAAAGCAGTAAATAACACAAAGCTTATATAATA
GATCATGAAGAAGCTTTATA

Downstream 100 bases:

>100_bases
TATTTTAATTTTCTAATCGTTGTGTGATAAGTATGAAGGAGTTTAAATTAGCGGTTTACGTTACGGCTCCAACTTTGAGG
GGTCTTAACGAGGAAAGGAT

Product: Alpha-xylosidase (xylS)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 731

Protein sequence:

>731_residues
MRIGNLNVEIEFIADNIVRVLYYYGREAIVDNSLVVLPNLEKLSIKGESTGPSIISFSSESLSVDINTSNGELIMKDNKG
GIVVKEKRRDLKFNEELSTYNVEQEFELSEGERVYGLGQHAGGNGLGQSSAYKLDYSGLSTTLSQRNTDIGIPFIVSSKG
YGILWDNYSLGSISLRRNKLKVWFEAGKKIDYYVIYGDSIDDVIKGYRKLTGDAPLLPKWAYGYWQSKERYKSQDEITSV
VKEFRERKIPLDVIVLDWRYWGKYGWNAFKFDETDFPRPKDMVEEIHKMGAKLAISIWPTFGKETEVFKDMESKGCIILG
TTAFNPFKDECRELFWSYVKGFYDLGIDAYWLDASEPETGLGLVFFSPIHDVDLEIGKGYEYLNAYPLMETKAVYEGQRR
ISNKRVVILTRSAFAGQQRHSAISWSGDVLGDWATLRAQIPAGLNFSISGIPYWTTDTGGFFSGNPETKAYAEIFVRWFQ
WSTFCPILRVHGTIFPKEPWRFPREYQEVILKYIRLRYKLLPYIYSLAWMTYSIGYTIMRPLVMDFRDDQNVYDFDEQYM
FGPYILISPVTLPSIIEKEVYLPSKEYWYDFWTGEKLEGGRMMDVKVTLDTIPLFVRSGAVLPLLGKNVNNAEEYWDVID
LRVYPGKNGYFELYDDDGITYEYEKGKYYIIPITWDEDKQELTIGKKRGELEMSKKIIKIIWVEKGKGIEHTKPDVEIEY
NGKETITVKRG

Sequences:

>Translated_731_residues
MRIGNLNVEIEFIADNIVRVLYYYGREAIVDNSLVVLPNLEKLSIKGESTGPSIISFSSESLSVDINTSNGELIMKDNKG
GIVVKEKRRDLKFNEELSTYNVEQEFELSEGERVYGLGQHAGGNGLGQSSAYKLDYSGLSTTLSQRNTDIGIPFIVSSKG
YGILWDNYSLGSISLRRNKLKVWFEAGKKIDYYVIYGDSIDDVIKGYRKLTGDAPLLPKWAYGYWQSKERYKSQDEITSV
VKEFRERKIPLDVIVLDWRYWGKYGWNAFKFDETDFPRPKDMVEEIHKMGAKLAISIWPTFGKETEVFKDMESKGCIILG
TTAFNPFKDECRELFWSYVKGFYDLGIDAYWLDASEPETGLGLVFFSPIHDVDLEIGKGYEYLNAYPLMETKAVYEGQRR
ISNKRVVILTRSAFAGQQRHSAISWSGDVLGDWATLRAQIPAGLNFSISGIPYWTTDTGGFFSGNPETKAYAEIFVRWFQ
WSTFCPILRVHGTIFPKEPWRFPREYQEVILKYIRLRYKLLPYIYSLAWMTYSIGYTIMRPLVMDFRDDQNVYDFDEQYM
FGPYILISPVTLPSIIEKEVYLPSKEYWYDFWTGEKLEGGRMMDVKVTLDTIPLFVRSGAVLPLLGKNVNNAEEYWDVID
LRVYPGKNGYFELYDDDGITYEYEKGKYYIIPITWDEDKQELTIGKKRGELEMSKKIIKIIWVEKGKGIEHTKPDVEIEY
NGKETITVKRG
>Mature_731_residues
MRIGNLNVEIEFIADNIVRVLYYYGREAIVDNSLVVLPNLEKLSIKGESTGPSIISFSSESLSVDINTSNGELIMKDNKG
GIVVKEKRRDLKFNEELSTYNVEQEFELSEGERVYGLGQHAGGNGLGQSSAYKLDYSGLSTTLSQRNTDIGIPFIVSSKG
YGILWDNYSLGSISLRRNKLKVWFEAGKKIDYYVIYGDSIDDVIKGYRKLTGDAPLLPKWAYGYWQSKERYKSQDEITSV
VKEFRERKIPLDVIVLDWRYWGKYGWNAFKFDETDFPRPKDMVEEIHKMGAKLAISIWPTFGKETEVFKDMESKGCIILG
TTAFNPFKDECRELFWSYVKGFYDLGIDAYWLDASEPETGLGLVFFSPIHDVDLEIGKGYEYLNAYPLMETKAVYEGQRR
ISNKRVVILTRSAFAGQQRHSAISWSGDVLGDWATLRAQIPAGLNFSISGIPYWTTDTGGFFSGNPETKAYAEIFVRWFQ
WSTFCPILRVHGTIFPKEPWRFPREYQEVILKYIRLRYKLLPYIYSLAWMTYSIGYTIMRPLVMDFRDDQNVYDFDEQYM
FGPYILISPVTLPSIIEKEVYLPSKEYWYDFWTGEKLEGGRMMDVKVTLDTIPLFVRSGAVLPLLGKNVNNAEEYWDVID
LRVYPGKNGYFELYDDDGITYEYEKGKYYIIPITWDEDKQELTIGKKRGELEMSKKIIKIIWVEKGKGIEHTKPDVEIEY
NGKETITVKRG

Specific function: Catalyzes the liberation of alpha-xylose from the non- reducing terminal glucose of xyloglucan oligosaccharides. Has high hydrolytic activity on the disaccharide isoprimeverose. Follows a retaining mechanism of substrate hydrolysis

COG id: COG1501

COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 31 family

Homologues:

Organism=Homo sapiens, GI66346737, Length=676, Percent_Identity=31.3609467455621, Blast_Score=245, Evalue=1e-64,
Organism=Homo sapiens, GI88900491, Length=635, Percent_Identity=27.0866141732283, Blast_Score=217, Evalue=4e-56,
Organism=Homo sapiens, GI38202257, Length=635, Percent_Identity=27.0866141732283, Blast_Score=216, Evalue=7e-56,
Organism=Homo sapiens, GI119393895, Length=577, Percent_Identity=26.3431542461005, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI119393893, Length=577, Percent_Identity=26.3431542461005, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI119393891, Length=577, Percent_Identity=26.3431542461005, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI221316699, Length=600, Percent_Identity=26.8333333333333, Blast_Score=175, Evalue=1e-43,
Organism=Homo sapiens, GI157364974, Length=572, Percent_Identity=26.3986013986014, Blast_Score=156, Evalue=8e-38,
Organism=Homo sapiens, GI310115361, Length=499, Percent_Identity=26.25250501002, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI153791946, Length=420, Percent_Identity=23.5714285714286, Blast_Score=78, Evalue=4e-14,
Organism=Escherichia coli, GI2367256, Length=667, Percent_Identity=25.3373313343328, Blast_Score=200, Evalue=3e-52,
Organism=Escherichia coli, GI2367323, Length=242, Percent_Identity=29.3388429752066, Blast_Score=115, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71991189, Length=516, Percent_Identity=31.9767441860465, Blast_Score=225, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI17560800, Length=682, Percent_Identity=28.1524926686217, Blast_Score=218, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17560798, Length=682, Percent_Identity=28.1524926686217, Blast_Score=217, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI71985706, Length=557, Percent_Identity=23.8779174147217, Blast_Score=129, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI32563849, Length=333, Percent_Identity=25.8258258258258, Blast_Score=112, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6319706, Length=614, Percent_Identity=26.8729641693811, Blast_Score=181, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24643749, Length=570, Percent_Identity=27.0175438596491, Blast_Score=187, Evalue=3e-47,
Organism=Drosophila melanogaster, GI24643753, Length=570, Percent_Identity=27.0175438596491, Blast_Score=187, Evalue=3e-47,
Organism=Drosophila melanogaster, GI24643751, Length=570, Percent_Identity=27.0175438596491, Blast_Score=187, Evalue=3e-47,
Organism=Drosophila melanogaster, GI24643746, Length=570, Percent_Identity=27.0175438596491, Blast_Score=187, Evalue=3e-47,
Organism=Drosophila melanogaster, GI21357605, Length=570, Percent_Identity=27.0175438596491, Blast_Score=187, Evalue=3e-47,
Organism=Drosophila melanogaster, GI24650054, Length=386, Percent_Identity=23.3160621761658, Blast_Score=77, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XYLS_SULSO (Q9P999)

Other databases:

- EMBL:   AJ251975
- EMBL:   AE006641
- PIR:   D90483
- RefSeq:   NP_344333.1
- ProteinModelPortal:   Q9P999
- SMR:   Q9P999
- GeneID:   1453042
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO3022
- NMPDR:   fig|273057.1.peg.2756
- HOGENOM:   HBG346343
- OMA:   EGQRRIS
- PhylomeDB:   Q9P999
- ProtClustDB:   CLSK2484581
- BioCyc:   SSOL273057:SSO3022-MONOMER
- InterPro:   IPR011013
- InterPro:   IPR000322
- InterPro:   IPR017853
- PANTHER:   PTHR22762

Pfam domain/function: PF01055 Glyco_hydro_31; SSF74650 Gal_mut_like; SSF51445 Glyco_hydro_cat

EC number: NA

Molecular weight: Translated: 84486; Mature: 84486

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00129 GLYCOSYL_HYDROL_F31_1; PS00707 GLYCOSYL_HYDROL_F31_2; PS00430 TONB_DEPENDENT_REC_1

Important sites: ACT_SITE 353-353 ACT_SITE 356-356 ACT_SITE 428-428

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGNLNVEIEFIADNIVRVLYYYGREAIVDNSLVVLPNLEKLSIKGESTGPSIISFSSE
CEECCEEEEEEEEHHHHHHHHHHHCCCEEECCCEEEEECCEEEEEECCCCCCCEEEECCC
SLSVDINTSNGELIMKDNKGGIVVKEKRRDLKFNEELSTYNVEQEFELSEGERVYGLGQH
EEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCC
AGGNGLGQSSAYKLDYSGLSTTLSQRNTDIGIPFIVSSKGYGILWDNYSLGSISLRRNKL
CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCEEEEECCEE
KVWFEAGKKIDYYVIYGDSIDDVIKGYRKLTGDAPLLPKWAYGYWQSKERYKSQDEITSV
EEEEECCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHCCHHHHHHH
VKEFRERKIPLDVIVLDWRYWGKYGWNAFKFDETDFPRPKDMVEEIHKMGAKLAISIWPT
HHHHHHCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECC
FGKETEVFKDMESKGCIILGTTAFNPFKDECRELFWSYVKGFYDLGIDAYWLDASEPETG
CCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
LGLVFFSPIHDVDLEIGKGYEYLNAYPLMETKAVYEGQRRISNKRVVILTRSAFAGQQRH
EEEEEECCCCCCCEEECCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHC
SAISWSGDVLGDWATLRAQIPAGLNFSISGIPYWTTDTGGFFSGNPETKAYAEIFVRWFQ
CEEECCCCCCCCCEEEEEECCCCCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WSTFCPILRVHGTIFPKEPWRFPREYQEVILKYIRLRYKLLPYIYSLAWMTYSIGYTIMR
HCCCCCCHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLVMDFRDDQNVYDFDEQYMFGPYILISPVTLPSIIEKEVYLPSKEYWYDFWTGEKLEGG
HHHHCCCCCCCCCCCCCCEEECCEEEEECCCCHHHHHHHHCCCCHHHEEEECCCCCCCCC
RMMDVKVTLDTIPLFVRSGAVLPLLGKNVNNAEEYWDVIDLRVYPGKNGYFELYDDDGIT
EEEEEEEEEEHHHHHHHCCCEEEEECCCCCCHHHHHEEEEEEEECCCCCEEEEECCCCCE
YEYEKGKYYIIPITWDEDKQELTIGKKRGELEMSKKIIKIIWVEKGKGIEHTKPDVEIEY
EEEECCEEEEEEEEECCCCCEEEECCCCCCHHHHCEEEEEEEEECCCCCCCCCCCEEEEE
NGKETITVKRG
CCCEEEEEECC
>Mature Secondary Structure
MRIGNLNVEIEFIADNIVRVLYYYGREAIVDNSLVVLPNLEKLSIKGESTGPSIISFSSE
CEECCEEEEEEEEHHHHHHHHHHHCCCEEECCCEEEEECCEEEEEECCCCCCCEEEECCC
SLSVDINTSNGELIMKDNKGGIVVKEKRRDLKFNEELSTYNVEQEFELSEGERVYGLGQH
EEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCC
AGGNGLGQSSAYKLDYSGLSTTLSQRNTDIGIPFIVSSKGYGILWDNYSLGSISLRRNKL
CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCEEEEECCEE
KVWFEAGKKIDYYVIYGDSIDDVIKGYRKLTGDAPLLPKWAYGYWQSKERYKSQDEITSV
EEEEECCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHCCHHHHHHH
VKEFRERKIPLDVIVLDWRYWGKYGWNAFKFDETDFPRPKDMVEEIHKMGAKLAISIWPT
HHHHHHCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECC
FGKETEVFKDMESKGCIILGTTAFNPFKDECRELFWSYVKGFYDLGIDAYWLDASEPETG
CCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
LGLVFFSPIHDVDLEIGKGYEYLNAYPLMETKAVYEGQRRISNKRVVILTRSAFAGQQRH
EEEEEECCCCCCCEEECCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHC
SAISWSGDVLGDWATLRAQIPAGLNFSISGIPYWTTDTGGFFSGNPETKAYAEIFVRWFQ
CEEECCCCCCCCCEEEEEECCCCCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WSTFCPILRVHGTIFPKEPWRFPREYQEVILKYIRLRYKLLPYIYSLAWMTYSIGYTIMR
HCCCCCCHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLVMDFRDDQNVYDFDEQYMFGPYILISPVTLPSIIEKEVYLPSKEYWYDFWTGEKLEGG
HHHHCCCCCCCCCCCCCCEEECCEEEEECCCCHHHHHHHHCCCCHHHEEEECCCCCCCCC
RMMDVKVTLDTIPLFVRSGAVLPLLGKNVNNAEEYWDVIDLRVYPGKNGYFELYDDDGIT
EEEEEEEEEEHHHHHHHCCCEEEEECCCCCCHHHHHEEEEEEEECCCCCEEEEECCCCCE
YEYEKGKYYIIPITWDEDKQELTIGKKRGELEMSKKIIKIIWVEKGKGIEHTKPDVEIEY
EEEECCEEEEEEEEECCCCCEEEECCCCCCHHHHCEEEEEEEEECCCCCCCCCCCEEEEE
NGKETITVKRG
CCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10801892; 11427726