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The map label for this gene is appC [H]

Identifier: 15899393

GI number: 15899393

Start: 2427250

End: 2428122

Strand: Reverse

Name: appC [H]

Synonym: SSO2671

Alternate gene names: 15899393

Gene position: 2428122-2427250 (Counterclockwise)

Preceding gene: 15899397

Following gene: 15899391

Centisome position: 81.15

GC content: 35.51

Gene sequence:

>873_bases
ATGGTGCAAGGCAAGTTTTTCGAGTATCTGAGACTATTATGGGATAACAAAAAGTCTAGAGTAGGATTAATAATAACCGT
ATTTTACATCTTAATTGCAATATTTGGGCAAATTATATTCCCTAAGACATACTCTTTACCTCCTAGCCCTACTACAATAT
TTATGCCTCCTCAACTATCAAACTTTTACCTTATCTTTGGAACTGGTCCATTTGCAGAAAGCATATTAGTACAGATTATT
CAAGGCGCCAAGTCAGTAATTGAAATAAGTTTTTTGGCTGGACTATTCGCAACGTTAATCGGAATAGTTGTAGGTATAAT
TGCGGGATATCTGGGTGGAATAATCGATAATATTCTCATGGGAATAACTGATATTATCCTAACTCTACCTAGCTTGATAC
TAATTATAATAATAGTTAGCGCGTTTAAAACTAGTAATCCAATTTTCCTCTCCTTGATATTAAGTATAACTAGTTGGGCT
GGATTAGCTAGAGCAGTAAGATCTCAAGTTCTAGTAATTAGAAACTCTCCTGCCGTGGAAGTGTTAAGGGTATTAGGACT
GTCTAGAAAATATATAATATTTAGGGAGGTGGTACCAACCCTAGGTTCATACATTGCGATACACTATATATTTAATGTGG
AAGCTGCGGTATATGCAGAGGTAGGATTATACTACTTAGGAGTATTACCCTATAATCCTAACAATTGGGGAGCAATGATC
CAACAAGCTCTTTCATATGGTGCCGCAGCAGGTGGTAAGGCAATATATTATCTAGCCTTCCCCACAATAGTAGTTGCTGG
TTTTATGAGTGGTCTAATACTATTAAGTTATGGAATTGATGAGATAAGTAATCCAAGAATAAGAAGATATTAA

Upstream 100 bases:

>100_bases
ATTATGCACTTCTAAAATCATTACACATTTATACTCATATCCATTGCTTATAGATTTTTCCTCCCGAGAAAATAAAAGAG
TGTGAAGTGAATTTATATTT

Downstream 100 bases:

>100_bases
AGGGAAAAAAGAAGAAAAATTTTTAAAAAAGACTATACTACCTTTTCCCATTAAAAATACTTACACCCTTTTATCTCCTT
CTCATTAATATTGCCACAGC

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MVQGKFFEYLRLLWDNKKSRVGLIITVFYILIAIFGQIIFPKTYSLPPSPTTIFMPPQLSNFYLIFGTGPFAESILVQII
QGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWA
GLARAVRSQVLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPNNWGAMI
QQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIRRY

Sequences:

>Translated_290_residues
MVQGKFFEYLRLLWDNKKSRVGLIITVFYILIAIFGQIIFPKTYSLPPSPTTIFMPPQLSNFYLIFGTGPFAESILVQII
QGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWA
GLARAVRSQVLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPNNWGAMI
QQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIRRY
>Mature_290_residues
MVQGKFFEYLRLLWDNKKSRVGLIITVFYILIAIFGQIIFPKTYSLPPSPTTIFMPPQLSNFYLIFGTGPFAESILVQII
QGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWA
GLARAVRSQVLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPNNWGAMI
QQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIRRY

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=294, Percent_Identity=25.1700680272109, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787760, Length=291, Percent_Identity=26.8041237113402, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787498, Length=294, Percent_Identity=26.530612244898, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789964, Length=295, Percent_Identity=26.1016949152542, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31843; Mature: 31843

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQGKFFEYLRLLWDNKKSRVGLIITVFYILIAIFGQIIFPKTYSLPPSPTTIFMPPQLS
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC
NFYLIFGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILM
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWAGLARAVRSQVLVIRNSPAVE
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHH
VLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPNNWGAMI
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCHHHHHH
QQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIRRY
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCC
>Mature Secondary Structure
MVQGKFFEYLRLLWDNKKSRVGLIITVFYILIAIFGQIIFPKTYSLPPSPTTIFMPPQLS
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC
NFYLIFGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILM
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWAGLARAVRSQVLVIRNSPAVE
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHH
VLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPNNWGAMI
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCHHHHHH
QQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIRRY
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]