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The map label for this gene is 15898937

Identifier: 15898937

GI number: 15898937

Start: 1983028

End: 1983879

Strand: Direct

Name: 15898937

Synonym: SSO2156

Alternate gene names: NA

Gene position: 1983028-1983879 (Clockwise)

Preceding gene: 15898936

Following gene: 15898938

Centisome position: 66.27

GC content: 38.62

Gene sequence:

>852_bases
TTGTATAACAAGTTTAAATTGATGGCAAAGATTTATTTAGGTCCCGCTGGGGTTCCTCATTCGGCTAAAAAGAAGAATAC
TGTGGAGGGTATAAGGACTGTTAAAGAGTTGGGCTTAAACGCTATGGAAGTTGAGTTTGTTCAAGGTGTAAGGATGAGTA
AGGAAACCGCAGAGGAAACTGGACAAGTTGCAAGGGAATTGGGAGTTAGGTTATCGGTCCACGCTCCATATTTTATAAAC
CTATGTTCTGAGGAAAAGGAGAAAATTGAGGCTTCGAAGCAGAGAATTTTAGATACTGCTGATAGAGCTGAGTTAATGGG
GGCTGACGCTATAGCTATTCATATTGCATTCTATGGGAAAATGACTCCAGAGGAATGTTATCAAAACGTTAAAGAAGGAT
TAGAAGAGGTAATAGATAAGGCTAGGGAAATGGGGATAAGGAACGTTAAGTTTGGTGTTGAAACTATGGCTAAAGAAACT
GCCTTTGGGACTTTGGATGAGGTTATTTCAATATCTAAGGAATTAAAGGGTGTGATACCCTATATAGATTGGGCTCATAC
TTTTGCTAGGCAGGGTGGAGAAATAGATTACGGGAAGATTATAGATAGGCTAATTAAGGAGCTAGGTTTAACTCATATAA
ATTCCCACTTTGAATCTCTAGTTTATAGAAGAGGAAAATATGTAGATGAGCACATTCCCATAGACGCTAACGCTCCGCCA
TTTGAACCATTAGCGAAGGAGTTGCTTAAAAGGGATATTTCAATAACATTAATATGTGAAAGTCCAGAATTAGAAAGAGA
TGCGTTAAAAATGAAGGAGGTATTAGAGAGGCTTGGATATAGGCTCGAATGA

Upstream 100 bases:

>100_bases
TTTACAAGAATAACTTCAATGAGGACGACGAGGATATAATGAGAATTTTAGAGGACGAGAAAAAACACTTCGCAATGTCA
GTTGATGCTTAAATACGTTT

Downstream 100 bases:

>100_bases
AATATTAGTAGCTTCAGATTATGATAGGACGTTAGCCAGTGAAGAGAATAATTTTGTAATATCACCGATTGTTTCACAAA
AAGTAAATGAATTTTCAAAA

Product: endonuclease IV-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MYNKFKLMAKIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEETGQVARELGVRLSVHAPYFIN
LCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECYQNVKEGLEEVIDKAREMGIRNVKFGVETMAKET
AFGTLDEVISISKELKGVIPYIDWAHTFARQGGEIDYGKIIDRLIKELGLTHINSHFESLVYRRGKYVDEHIPIDANAPP
FEPLAKELLKRDISITLICESPELERDALKMKEVLERLGYRLE

Sequences:

>Translated_283_residues
MYNKFKLMAKIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEETGQVARELGVRLSVHAPYFIN
LCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECYQNVKEGLEEVIDKAREMGIRNVKFGVETMAKET
AFGTLDEVISISKELKGVIPYIDWAHTFARQGGEIDYGKIIDRLIKELGLTHINSHFESLVYRRGKYVDEHIPIDANAPP
FEPLAKELLKRDISITLICESPELERDALKMKEVLERLGYRLE
>Mature_283_residues
MYNKFKLMAKIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEETGQVARELGVRLSVHAPYFIN
LCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECYQNVKEGLEEVIDKAREMGIRNVKFGVETMAKET
AFGTLDEVISISKELKGVIPYIDWAHTFARQGGEIDYGKIIDRLIKELGLTHINSHFESLVYRRGKYVDEHIPIDANAPP
FEPLAKELLKRDISITLICESPELERDALKMKEVLERLGYRLE

Specific function: Unknown

COG id: COG0648

COG function: function code L; Endonuclease IV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001719
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 3.1.21.2

Molecular weight: Translated: 32015; Mature: 32015

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00729 AP_NUCLEASE_F2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNKFKLMAKIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEET
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GQVARELGVRLSVHAPYFINLCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGK
HHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHHCC
MTPEECYQNVKEGLEEVIDKAREMGIRNVKFGVETMAKETAFGTLDEVISISKELKGVIP
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YIDWAHTFARQGGEIDYGKIIDRLIKELGLTHINSHFESLVYRRGKYVDEHIPIDANAPP
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FEPLAKELLKRDISITLICESPELERDALKMKEVLERLGYRLE
HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MYNKFKLMAKIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEET
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GQVARELGVRLSVHAPYFINLCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGK
HHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHHCC
MTPEECYQNVKEGLEEVIDKAREMGIRNVKFGVETMAKETAFGTLDEVISISKELKGVIP
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YIDWAHTFARQGGEIDYGKIIDRLIKELGLTHINSHFESLVYRRGKYVDEHIPIDANAPP
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FEPLAKELLKRDISITLICESPELERDALKMKEVLERLGYRLE
HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]