Click here to switch to the map view.

The map label for this gene is yidA [C]

Identifier: 15898938

GI number: 15898938

Start: 1983860

End: 1984561

Strand: Direct

Name: yidA [C]

Synonym: SSO2157

Alternate gene names: 15898938

Gene position: 1983860-1984561 (Clockwise)

Preceding gene: 15898937

Following gene: 15898947

Centisome position: 66.3

GC content: 32.91

Gene sequence:

>702_bases
TTGGATATAGGCTCGAATGAAATATTAGTAGCTTCAGATTATGATAGGACGTTAGCCAGTGAAGAGAATAATTTTGTAAT
ATCACCGATTGTTTCACAAAAAGTAAATGAATTTTCAAAAAAATATAAATTTGTAGTGGTAACTGGTAGGGAGAAGAAAT
TTATTGATAAATTGGCTGTTGGTTTGAAACCCACTGCATGGATACTGGAGAATGGTTCCCTAATACTTTTCAACGATAGA
GAATTTGTGCTTTGTGAAAAAAGTTGGTTTGAAAGAGATAGGAAGAAGATTATTGAAATATTAGATAACCTTAAGGTTAG
GTATTCCATAGGTAGGATTATATTGTATGTGGATGGCTATGGATCTAAATTAGATATGTTAAGTGAAATAGAAAAGTATG
GGAGAATAGAGGTAAATAGAAACGATGCTATGATACTACCTAAAGGTGTGGATAAGGGTGTAGGAGTTTTGAAGTTTAAG
GAATTAACTGGGTTTAAGGGAAAGATAATAGCCTTAGGAGACAGTGAAAATGATTATGCGTTGTTTAGAGTTGCCGACAT
TAAAGTAGCAGTTGCAAATGCAATACCTCAAATAAAGGAAATTGCTGACATAGTTACCGAAAATCCTAATGGTTTAGGAG
TCGTGGAGATTTTAGATAAGATACTATCTGGAAATTTTGGAAAAGAAGTAGATATCTACTAA

Upstream 100 bases:

>100_bases
GCGAAGGAGTTGCTTAAAAGGGATATTTCAATAACATTAATATGTGAAAGTCCAGAATTAGAAAGAGATGCGTTAAAAAT
GAAGGAGGTATTAGAGAGGC

Downstream 100 bases:

>100_bases
GAACTCGTGAACTCTTCTCATATGCCATGGGTAATAAGGTTTTAATCTAAACCTCTCAGACAATATTTCAGTAGAAAACC
CATAGTCTTTAGCCATTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: PGP 2; PGPase 2

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MDIGSNEILVASDYDRTLASEENNFVISPIVSQKVNEFSKKYKFVVVTGREKKFIDKLAVGLKPTAWILENGSLILFNDR
EFVLCEKSWFERDRKKIIEILDNLKVRYSIGRIILYVDGYGSKLDMLSEIEKYGRIEVNRNDAMILPKGVDKGVGVLKFK
ELTGFKGKIIALGDSENDYALFRVADIKVAVANAIPQIKEIADIVTENPNGLGVVEILDKILSGNFGKEVDIY

Sequences:

>Translated_233_residues
MDIGSNEILVASDYDRTLASEENNFVISPIVSQKVNEFSKKYKFVVVTGREKKFIDKLAVGLKPTAWILENGSLILFNDR
EFVLCEKSWFERDRKKIIEILDNLKVRYSIGRIILYVDGYGSKLDMLSEIEKYGRIEVNRNDAMILPKGVDKGVGVLKFK
ELTGFKGKIIALGDSENDYALFRVADIKVAVANAIPQIKEIADIVTENPNGLGVVEILDKILSGNFGKEVDIY
>Mature_233_residues
MDIGSNEILVASDYDRTLASEENNFVISPIVSQKVNEFSKKYKFVVVTGREKKFIDKLAVGLKPTAWILENGSLILFNDR
EFVLCEKSWFERDRKKIIEILDNLKVRYSIGRIILYVDGYGSKLDMLSEIEKYGRIEVNRNDAMILPKGVDKGVGVLKFK
ELTGFKGKIIALGDSENDYALFRVADIKVAVANAIPQIKEIADIVTENPNGLGVVEILDKILSGNFGKEVDIY

Specific function: Catalyzes the dephosphorylation of 2-phosphoglycolate

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal SPP-like hydrolase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PGP2_SULSO (P95931)

Other databases:

- EMBL:   Y08256
- EMBL:   AE006641
- PIR:   S74064
- RefSeq:   NP_343543.1
- ProteinModelPortal:   P95931
- GeneID:   1453660
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO2157
- NMPDR:   fig|273057.1.peg.1966
- HOGENOM:   HBG553810
- OMA:   KEDGEGV
- ProtClustDB:   CLSK803224
- BioCyc:   SSOL273057:SSO2157-MONOMER
- BRENDA:   3.1.3.18
- HAMAP:   MF_01419
- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR006382
- InterPro:   IPR006378
- Gene3D:   G3DSA:3.40.50.1000
- TIGRFAMs:   TIGR01484
- TIGRFAMs:   TIGR01487
- TIGRFAMs:   TIGR01482

Pfam domain/function: PF08282 Hydrolase_3; SSF56784 SSF56784

EC number: =3.1.3.18

Molecular weight: Translated: 26216; Mature: 26216

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: ACT_SITE 13-13 BINDING 152-152

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIGSNEILVASDYDRTLASEENNFVISPIVSQKVNEFSKKYKFVVVTGREKKFIDKLAV
CCCCCCCEEEECCCCHHHCCCCCCEEEEHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHH
GLKPTAWILENGSLILFNDREFVLCEKSWFERDRKKIIEILDNLKVRYSIGRIILYVDGY
CCCCCEEEEECCCEEEECCCEEEEECHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECC
GSKLDMLSEIEKYGRIEVNRNDAMILPKGVDKGVGVLKFKELTGFKGKIIALGDSENDYA
CCCHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCEE
LFRVADIKVAVANAIPQIKEIADIVTENPNGLGVVEILDKILSGNFGKEVDIY
EEEEEEEEEEEHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure
MDIGSNEILVASDYDRTLASEENNFVISPIVSQKVNEFSKKYKFVVVTGREKKFIDKLAV
CCCCCCCEEEECCCCHHHCCCCCCEEEEHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHH
GLKPTAWILENGSLILFNDREFVLCEKSWFERDRKKIIEILDNLKVRYSIGRIILYVDGY
CCCCCEEEEECCCEEEECCCEEEEECHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECC
GSKLDMLSEIEKYGRIEVNRNDAMILPKGVDKGVGVLKFKELTGFKGKIIALGDSENDYA
CCCHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCEE
LFRVADIKVAVANAIPQIKEIADIVTENPNGLGVVEILDKILSGNFGKEVDIY
EEEEEEEEEEEHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726