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The map label for this gene is ydcM [C]

Identifier: 15898907

GI number: 15898907

Start: 1948091

End: 1948954

Strand: Direct

Name: ydcM [C]

Synonym: SSO2123

Alternate gene names: 15898907

Gene position: 1948091-1948954 (Clockwise)

Preceding gene: 15898905

Following gene: 15898908

Centisome position: 65.1

GC content: 40.97

Gene sequence:

>864_bases
ATGCCCACCTTAGGGTTTCGCTTCCGTGCTTACGCTGACGAACAAACCCTTAGGGCGTTAAAAGCCCAGTTGAAGTTAGC
GTGCAAAATCTACAACACCTTAAGGTGGGCAGACATCTATTTCTATCAGAGGGATGGGAAAGGACTAACACAAACTGAGT
TAAGACAGTTGGCTCTAGATCTGAGAAAACAAGATGATGAGTATAAGCAACTCTACTCGCAAGTAGTTCAACAAATAGCT
GACCGTTATTACGAAGCTAAGAAGAGGTTTTTCGAAGGTTTAGCACGTTTCCCAAAAGAAAAGAAACCTCACAAGCACTA
CTCCCTTGTCTATACGCAAAGCGGTTGGAAAATACTTCACGTTAGAGAAATAAGAAAAGGCAAGAAGAAACTAATAACGC
TTAAACTATCAAATCTTGGTACATTCAAGGTAATTATACACAGGGACTTTCCCCTTGACAAAGTAAAGAGGGTGATAGTG
AAGCTAACAAGATCTGAGAGGATATACATCACTTTCGTAGTTGATCACGAATTCCCCAAGTTACCTAACACTGGTAAGGA
AGTGGCGATAGATGTTGGTGTAGAAAAGTTGTTAGTAACGTCAGATGGTGAATATTTCCCCAATCTGAGACCTCTTGAAA
AGGCGTTATGGAAAGTGAAGCATCTACACAGAGAACTTTCAAGGAAGAAGTTCCTCTCTCATAATTGGTTTAAGGCTAAG
GTTAAGCTTGCTAGGGCTTATGAGCATTTGAAGAATCTAAGAACGGATCTTTACATGAAGTTGGGTAAGTGGTTTGCTGA
GCATTATGACGTTGTGGTGATGGAGGGTATTCACGCTAAACAACTTGTGTGGGTAAGTCCTTGA

Upstream 100 bases:

>100_bases
TTTATAACAGACGGGGGTTCAAAGGGGGCGGAAAACTTCTCTTTGAGATGAATCCCTTTGTAGAAAAGTTAAAAATAGGA
AAATAACGAAATACACATCA

Downstream 100 bases:

>100_bases
GGTCTCTGAGGAGGAGGCTGAGTGACGTGGGATTTGGTGAGCTGAGGGATGTGCTGAAGTATCAGCTGGAAAAATACGGA
AAGAAACTCATCCTAGTTAA

Product: transposon ISC1316 Orf1

Products: NA

Alternate protein names: Transposase For Insertion Sequence Element; Transposase-Like Protein B; ISCpe2 Transposase OrfB; Transposase ISC; Transposase OrfB; Amidase; ISSoc3 OrfB Transposase; PeyerS Patch-Specific Virulence Factor GipA; ISSoc9 Transposase; Second ORF In Transposon ISC; ISSoc12 Transposase; ISSoc7 Transposase; Transposon; Gifsy-1 Prophage GlpA; Partial Transposase In ISC; Virulence Protein GipA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MPTLGFRFRAYADEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKQLYSQVVQQIA
DRYYEAKKRFFEGLARFPKEKKPHKHYSLVYTQSGWKILHVREIRKGKKKLITLKLSNLGTFKVIIHRDFPLDKVKRVIV
KLTRSERIYITFVVDHEFPKLPNTGKEVAIDVGVEKLLVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSHNWFKAK
VKLARAYEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVWVSP

Sequences:

>Translated_287_residues
MPTLGFRFRAYADEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKQLYSQVVQQIA
DRYYEAKKRFFEGLARFPKEKKPHKHYSLVYTQSGWKILHVREIRKGKKKLITLKLSNLGTFKVIIHRDFPLDKVKRVIV
KLTRSERIYITFVVDHEFPKLPNTGKEVAIDVGVEKLLVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSHNWFKAK
VKLARAYEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVWVSP
>Mature_286_residues
PTLGFRFRAYADEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKQLYSQVVQQIAD
RYYEAKKRFFEGLARFPKEKKPHKHYSLVYTQSGWKILHVREIRKGKKKLITLKLSNLGTFKVIIHRDFPLDKVKRVIVK
LTRSERIYITFVVDHEFPKLPNTGKEVAIDVGVEKLLVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSHNWFKAKV
KLARAYEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVWVSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI288549314, Length=215, Percent_Identity=28.3720930232558, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34192; Mature: 34060

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLGFRFRAYADEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALD
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHH
LRKQDDEYKQLYSQVVQQIADRYYEAKKRFFEGLARFPKEKKPHKHYSLVYTQSGWKILH
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEE
VREIRKGKKKLITLKLSNLGTFKVIIHRDFPLDKVKRVIVKLTRSERIYITFVVDHEFPK
HHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCC
LPNTGKEVAIDVGVEKLLVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSHNWFKAK
CCCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VKLARAYEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVWVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECC
>Mature Secondary Structure 
PTLGFRFRAYADEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALD
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHH
LRKQDDEYKQLYSQVVQQIADRYYEAKKRFFEGLARFPKEKKPHKHYSLVYTQSGWKILH
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEE
VREIRKGKKKLITLKLSNLGTFKVIIHRDFPLDKVKRVIVKLTRSERIYITFVVDHEFPK
HHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCC
LPNTGKEVAIDVGVEKLLVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSHNWFKAK
CCCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VKLARAYEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVWVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA