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The map label for this gene is 15897820

Identifier: 15897820

GI number: 15897820

Start: 797721

End: 798959

Strand: Direct

Name: 15897820

Synonym: SSO0939

Alternate gene names: NA

Gene position: 797721-798959 (Clockwise)

Preceding gene: 15897815

Following gene: 15897821

Centisome position: 26.66

GC content: 36.32

Gene sequence:

>1239_bases
ATGATGAAAATATACCTAATTGAGCATGTTATTGGAGCAGTTGCTTACGATGAAAATGGAAATATTGTAGACTATATTAC
AAATCCAAGAGATTTGGGAAAAATAACTGAGGAACTATTAAATAATGAAAAGGGTATCCCATTCAGCGCAACAGTTGAGT
TATTAAAGAAAGTTAATCCACAAGAGGTAGTAGTTGAGAACGAAGCTGAAGTTCCTAAATTACAAGCATTAGGTTATAGG
GTTTCATATGAGCCATATAGCAAGGTTTCGAGAATATTTAGGGAATCATTACCTAAAGTGGCAATAGATATAAAATTTGC
AAGCAATGAAGAGGATTATTATAATTTCCTTCATGAACTTTCACTAGAATATACCAGAAGAAAGCTGAGGTCTGCGGCAC
AAAAGAGAGACCTTTTAGCTATTCAAGCGGTTAGAGCAATGGATGATATAGATAAGACCATAAATCTTTTCTCAGAAAGA
TTAAGAGAATGGTATAGTATTCACTTCCCAGAATTAGATAAGCTTATTGAGGATCACGAGGAATATGCAACTATAGTATC
TAGGTTTGGTGATAGGGGGTTTTTAACTATTGATAGTTTAAAGGAATTGGGTTTCAACGAGCAAAGGATAAATAGGATCC
TTGATGCAGCAAAGAAAAGTATAGGTGCAGATATTTCAGAAGACGACTTATCTGCAATGAGGATGATTGCGAACACTATT
TTAGACTTGTATAATATTAGGAGAAATCTTAATAATTATCTAGAAGGTGTAATGAAAGAAGTTGCTCCAAATGTAACAGC
CTTAGTGGGTCCAGCATTAGGTGCTAGATTATTGAGTATAGCAGGGAGTTTAGATGAATTAGCTAAAATGCCAGCTAGTA
CTATCCAAGTATTGGGAGCGGAAAAGGCCTTATTTAGGGCGTTAAGAAGTGGCGGAAGGCCACCCAAACATGGTATAATA
TTCCAGTACCCTGCTATTCATACATCACCTAGATGGCAAAGGGGTAAGATTGCCAGAGCTTTAGCAGCTAAATTAGCAAT
AGCTGCCAGAGTAGATGCTTTTAGTGGTAGATTTATAGGCGATCAACTAAATGAACAGTTAAAGAAGAGGATAGATGAAA
TTAAAGAGAAATTTGCGCAACCACCACCTAAAAAGCCGCAACAACAAAAGCCACAGCAACCACAAAAACAGCAAGCAAAA
GGTAAAAAAGGTGGAAAGAGAAGAGGTAAAAGAAAGTGA

Upstream 100 bases:

>100_bases
TTTCCCGCTTTGGTTAACGAACCGTGTGAAGGCATATCTACTCTTATTACAACTTGAGCATTTAAACTTAAAAATTTGTC
AGATAGGTTTGTAGTGAGAG

Downstream 100 bases:

>100_bases
TAAAAAATGTCTGAAGTAATTACCGTAAAACAAACCAATATGGAAAATATTTATGAATGTGAGTTTAACGATGGTAGTTT
TCGATTATGTACAAGAAACC

Product: C/D box methylation guide ribonucleoprotein complex aNOP56 subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MMKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYR
VSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSER
LREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTI
LDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGII
FQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQPPPKKPQQQKPQQPQKQQAK
GKKGGKRRGKRK

Sequences:

>Translated_412_residues
MMKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYR
VSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSER
LREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTI
LDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGII
FQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQPPPKKPQQQKPQQPQKQQAK
GKKGGKRRGKRK
>Mature_412_residues
MMKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYR
VSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSER
LREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTI
LDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGII
FQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQPPPKKPQQQKPQQPQKQQAK
GKKGGKRRGKRK

Specific function: Unknown

COG id: COG1498

COG function: function code J; Protein implicated in ribosomal biogenesis, Nop56p homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Nop domain [H]

Homologues:

Organism=Homo sapiens, GI32483374, Length=259, Percent_Identity=42.0849420849421, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI7706254, Length=262, Percent_Identity=39.6946564885496, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI221136939, Length=256, Percent_Identity=29.296875, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562296, Length=279, Percent_Identity=38.7096774193548, Blast_Score=192, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17509449, Length=277, Percent_Identity=37.9061371841155, Blast_Score=191, Evalue=5e-49,
Organism=Caenorhabditis elegans, GI17510923, Length=327, Percent_Identity=27.82874617737, Blast_Score=109, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6323226, Length=256, Percent_Identity=41.796875, Blast_Score=200, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6324886, Length=280, Percent_Identity=38.9285714285714, Blast_Score=192, Evalue=6e-50,
Organism=Saccharomyces cerevisiae, GI6321528, Length=280, Percent_Identity=29.2857142857143, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28572126, Length=258, Percent_Identity=41.4728682170543, Blast_Score=197, Evalue=7e-51,
Organism=Drosophila melanogaster, GI17137636, Length=235, Percent_Identity=40, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21357435, Length=277, Percent_Identity=32.129963898917, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012976
- InterPro:   IPR002687 [H]

Pfam domain/function: PF01798 Nop; PF08060 NOSIC [H]

EC number: NA

Molecular weight: Translated: 46693; Mature: 46693

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNP
CEEEHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
QEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHEL
HHEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
SLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTI
HHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH
EKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIG
HHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
DQLNEQLKKRIDEIKEKFAQPPPKKPQQQKPQQPQKQQAKGKKGGKRRGKRK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNP
CEEEHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
QEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHEL
HHEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
SLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTI
HHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH
EKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIG
HHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
DQLNEQLKKRIDEIKEKFAQPPPKKPQQQKPQQPQKQQAKGKKGGKRRGKRK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]