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The map label for this gene is rpl3p [H]

Identifier: 15897623

GI number: 15897623

Start: 611680

End: 612735

Strand: Reverse

Name: rpl3p [H]

Synonym: SSO0719

Alternate gene names: 15897623

Gene position: 612735-611680 (Counterclockwise)

Preceding gene: 15897624

Following gene: 15897622

Centisome position: 20.48

GC content: 36.74

Gene sequence:

>1056_bases
ATGGGTCATCGAAAGTTAGCCTCACCTAGACGTGGGTCAGCTGGTCTTAGACCTAGAAAAAGATCATCCGAGTTATTACC
AACACCTAGAACATGGCCTCAAATAAATTCACAGAATCCAAAATTGTTAGGCTTTGTAGGATATAAGGTTGGCATGACAC
ACGTTTTTATGATTGACGATTGGCCTAACTCTCCTACTAATGGTAAAGAGATATATATGCCGGTTACAGTCTTAGAAGTA
CCTCCAATTATACCGTTGGCGTTAAGAGCTTATGCAATTGACGGTAAAGGCGAACCAAACGTAATAACAGAGTATTGGTC
TTCCTCCTCTTTACAGTTCTTGGATATTACGAGAAGAATTCATTCAATTTCATCTTTTTTGAAAGATGATGAAAGTAAAA
AGAAGTTCGATGAAAGATTTAATACTAAGTTGGATCTTATCAAATCTAACCTAGATAGAATAGTCTACTTTAGGCTTTTG
GTCTCCACTCAACCTAGGAAGATACCATCATTAGGTAAAAAAGCGCCAGATTTAGTAGAGATTCAGATAGGTGGAGGAGA
AAAGAAATCACAATTGGACTATGCATTAAACATTCTAGGAAAAGAAATCACAATTAGAGACGTTTTCAAAGAGGGTCAAC
TAATAGATGTGGTAGGAGTTACTAAGGGTAAGGGTTTTGCTGGTGTGATAAAAAGATATAGTGTGGTAGAATTACCTAGG
TGGCATAAGCATAGAAAAGGAAGTAGGAAAATAGGTACTAGAGGTCCATCTTTAGGAACACCTAGTTATACGCCTCAGCC
TGGACAGTTAGGTTTTCATAGGAGAACTGAATATAATAAGAGGATTATAAAAATTGGTGATGAGCCTAAAGAGATAAATC
CTGCAGGTGGTTTTGTAAGATATGGAATAGTAAGGAACACATATGTTTTGTTAGAAGGCTCAATATTAGGTTCAAAGAAG
AGGCCAATATTCTTAAGAGAACCCGTTAGGCCTTCTTATGTTTTTGAAAATCCTCCTAAGATAACTTATGTTAACCTTTT
AAGTCAACAAGGGTGA

Upstream 100 bases:

>100_bases
AAGAGGCATTAGCTTATTCTCTGTCTATTCTAAACCTTCTGTTAAGTTAGATTTATAATGCTTGAGTGATAGGTGAAATA
GCAATTAGTGGGGATTAAGA

Downstream 100 bases:

>100_bases
AAGTGAATGTATTTAGAGCTAGTTAAGAAGAAGTCTGATATTTTGGATAAAGATGGAAATAGAATAAAAGAGGTTGAATT
ACCCATTATTTTTTCGTTTC

Product: 50S ribosomal protein L3P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEV
PPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLL
VSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR
WHKHRKGSRKIGTRGPSLGTPSYTPQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK
RPIFLREPVRPSYVFENPPKITYVNLLSQQG

Sequences:

>Translated_351_residues
MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEV
PPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLL
VSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR
WHKHRKGSRKIGTRGPSLGTPSYTPQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK
RPIFLREPVRPSYVFENPPKITYVNLLSQQG
>Mature_350_residues
GHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVP
PIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLV
STQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRW
HKHRKGSRKIGTRGPSLGTPSYTPQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKR
PIFLREPVRPSYVFENPPKITYVNLLSQQG

Specific function: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit [H]

COG id: COG0087

COG function: function code J; Ribosomal protein L3

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L3P family [H]

Homologues:

Organism=Homo sapiens, GI4506649, Length=362, Percent_Identity=34.5303867403315, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI76496472, Length=353, Percent_Identity=32.8611898016997, Blast_Score=171, Evalue=9e-43,
Organism=Homo sapiens, GI4826988, Length=369, Percent_Identity=31.7073170731707, Blast_Score=161, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI71984538, Length=361, Percent_Identity=34.9030470914127, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI71984544, Length=350, Percent_Identity=30.5714285714286, Blast_Score=141, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI71984550, Length=233, Percent_Identity=36.480686695279, Blast_Score=119, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6324637, Length=351, Percent_Identity=31.6239316239316, Blast_Score=149, Evalue=9e-37,
Organism=Drosophila melanogaster, GI17737907, Length=369, Percent_Identity=34.4173441734417, Blast_Score=177, Evalue=6e-45,
Organism=Drosophila melanogaster, GI24645877, Length=352, Percent_Identity=33.8068181818182, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24645879, Length=352, Percent_Identity=33.8068181818182, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24645875, Length=92, Percent_Identity=41.304347826087, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000597
- InterPro:   IPR019928
- InterPro:   IPR019926
- InterPro:   IPR009000 [H]

Pfam domain/function: PF00297 Ribosomal_L3 [H]

EC number: NA

Molecular weight: Translated: 39671; Mature: 39539

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS00474 RIBOSOMAL_L3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEC
WPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRI
CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHH
HSISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVE
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
IQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR
EEECCCCCHHHHHHHHHHHCCEEEEHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
WHKHRKGSRKIGTRGPSLGTPSYTPQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVR
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEE
YGIVRNTYVLLEGSILGSKKRPIFLREPVRPSYVFENPPKITYVNLLSQQG
EEEEECEEEEEECCEECCCCCCEEEECCCCCCEEECCCCCEEEEEEECCCC
>Mature Secondary Structure 
GHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEC
WPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRI
CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHH
HSISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVE
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
IQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR
EEECCCCCHHHHHHHHHHHCCEEEEHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
WHKHRKGSRKIGTRGPSLGTPSYTPQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVR
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEE
YGIVRNTYVLLEGSILGSKKRPIFLREPVRPSYVFENPPKITYVNLLSQQG
EEEEECEEEEEECCEECCCCCCEEEECCCCCCEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA