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The map label for this gene is rpl4lp [H]

Identifier: 15897622

GI number: 15897622

Start: 610870

End: 611673

Strand: Reverse

Name: rpl4lp [H]

Synonym: SSO0718

Alternate gene names: 15897622

Gene position: 611673-610870 (Counterclockwise)

Preceding gene: 15897623

Following gene: 15897621

Centisome position: 20.44

GC content: 37.94

Gene sequence:

>804_bases
ATGTATTTAGAGCTAGTTAAGAAGAAGTCTGATATTTTGGATAAAGATGGAAATAGAATAAAAGAGGTTGAATTACCCAT
TATTTTTTCGTTTCCAGTAAGAAAAGACCTAATAAGAAGAGTATTTATAGCTGAGTTTACACATTCGCTACAACCAAAAG
GTAGAGATCCTAATGCAGGCAAAAGGACATCAGCTGAGAGTTTTGGAATAAATCTTGGTATGGCCAGAGTTCCTAGAGTT
AAAAATTCTGGTGAAGCTGCCTTAGCACCTAATACCGTAGGCGGAAGATTAGCATTTCCCCCCTCAGTAAACAAAAAACT
TGCAGAAGAGGCAAACGTTAAGGAGAAACGATTAGCTGTAATTAGTGCACTAAGCGCTACAGCGGACATAGCTTTCGTCA
GAGCTAGGGGACATGTATTTAAAGATTCAGTACGTTTCCCTATAGTAGTAACTGACGATATTGTTAATCTAAAAACCACA
AGTGAGGTGGAAGAGTTTTTAAAGAAAATAGGTGTTTACGATGATGTAGAGAGAGTGAAAGAAAGGATTAGGATAAGGGC
TGGAAAGGGCAAAATGAGGGGAAGAAAGTATAAGGAACCAATAGGTCCGTTAATAATTGTACATGACAGCAATTCCCCAA
TAATTAAGGCTGCAAGAAACTTAGCTGGAGTTGATGTAGTTAATGCTAAAGACGTAAGCGTTATTCATTTGGCTCCCGGA
GCTCATCCGGGTAGACTTACTATTTATACCGAAAGTAGTATAAAGATTTTAGACGAACGATTAAGTAAGAGAGTGGTGAG
TTAG

Upstream 100 bases:

>100_bases
GCCAATATTCTTAAGAGAACCCGTTAGGCCTTCTTATGTTTTTGAAAATCCTCCTAAGATAACTTATGTTAACCTTTTAA
GTCAACAAGGGTGAAAGTGA

Downstream 100 bases:

>100_bases
AATGATTCAAATGGCTTTAGCTACAGAGAAGGCATTAAAACTTATTGAGTCCTATAATACGCTTACATTAATAGTAGATA
AGAGTGATACTAAAGACGAC

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MYLELVKKKSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRV
KNSGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTT
SEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPG
AHPGRLTIYTESSIKILDERLSKRVVS

Sequences:

>Translated_267_residues
MYLELVKKKSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRV
KNSGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTT
SEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPG
AHPGRLTIYTESSIKILDERLSKRVVS
>Mature_267_residues
MYLELVKKKSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRV
KNSGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTT
SEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPG
AHPGRLTIYTESSIKILDERLSKRVVS

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=244, Percent_Identity=38.1147540983607, Blast_Score=154, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17508669, Length=244, Percent_Identity=37.2950819672131, Blast_Score=168, Evalue=3e-42,
Organism=Saccharomyces cerevisiae, GI6320215, Length=248, Percent_Identity=36.2903225806452, Blast_Score=142, Evalue=7e-35,
Organism=Saccharomyces cerevisiae, GI6319505, Length=248, Percent_Identity=36.2903225806452, Blast_Score=142, Evalue=7e-35,
Organism=Drosophila melanogaster, GI24650747, Length=244, Percent_Identity=33.6065573770492, Blast_Score=154, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 29535; Mature: 29535

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLELVKKKSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAG
CCHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KRTSAESFGINLGMARVPRVKNSGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAV
CCCCHHHCCCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCCCHHHHHHCCCHHHHHHH
ISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVK
HHHHHHHHHEEEEEECCCEECCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHH
ERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPG
HHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCEEECCCCEEEEEECCC
AHPGRLTIYTESSIKILDERLSKRVVS
CCCCEEEEEECCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYLELVKKKSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAG
CCHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KRTSAESFGINLGMARVPRVKNSGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAV
CCCCHHHCCCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCCCHHHHHHCCCHHHHHHH
ISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVK
HHHHHHHHHEEEEEECCCEECCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHH
ERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPG
HHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCEEECCCCEEEEEECCC
AHPGRLTIYTESSIKILDERLSKRVVS
CCCCEEEEEECCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA