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The map label for this gene is selB [C]

Identifier: 15897398

GI number: 15897398

Start: 405273

End: 406178

Strand: Reverse

Name: selB [C]

Synonym: SSO0470

Alternate gene names: 15897398

Gene position: 406178-405273 (Counterclockwise)

Preceding gene: 15897400

Following gene: 15897395

Centisome position: 13.57

GC content: 33.11

Gene sequence:

>906_bases
ATGTATTACGGGAGTATAATTACAGTCTTATCGTCAGATAAGAATAAACTAACTGGGATAGCCGAAAAACTAGGTAAGCT
TCATGAAACCGCCAAGACAAAAATATATTATAGAAAAAAGGGGGAATACATTAGATCAATCCTATTGACTACAGAGTATC
CGGAAAAAATTATAGATTTAGCTGAAGCATTATCACTCTCGTCGACTGCAATATTATATATACCAGAAACTTTAACGTGG
ATGGATGGAGAGCTAGCACTTTTAATTGATTCTCTAAATACGCATAACAAGATAGTAATATCCAACTTAGATCAAGGTAA
AATAAATAATATTTTAGGCTCTTTAAGCTCCTTTACTAAATTCGATCTATATAATGATATTCCAGACTTAAGCGAGACCG
AAGAGGAGGATAAGGGAATAGTATATGTAGATAGAGTATTCACAGTCAAAGGTGTTGGAACCGTAGTTACTGGATTCTCA
TTTACCAATGTTGAAGTTCATGAGAAATTAGTGGCGTTACCTTATAATAAGGAGGTTGAAATAAAGAGTATTCAAGTTTT
AGATGAGGATCAAAAGAGTGTTTCAACCGGAGTTAGAATAGGGTTTGCTCTGAAAAACGTAAAAGAAGAGGAAATAGAAG
ATTTACTGTATTTGGTTAAGCCAAATGTTAAGGTTGTAAAGGAAATAGAAGGACAAATAACTAATTACAAATGGTCCACT
ATAAATCAAGGTCAAAATCACATAATAGTTAAGGGTCATGGAATTGCAGCTAATATAAAAGTCGATAATCAAAAAGCTAA
GATTATGTCATCTGTTCCAATACCTATTGTTGACAATAGGATACTTGTCTTAAACGTTAACGTCAGACAGGGAAAACCAA
GAGTCGCTGGATATATTAGTTTATAA

Upstream 100 bases:

>100_bases
AGGATGAAACCAAGAAATATTAATGTGAGACCAGCCGCAATTAACTTCATATGTTAATCTTTTGTTATAAGCTTTATAAA
CTTTATATTAAGGTGAGCGT

Downstream 100 bases:

>100_bases
GTTAATTAGTATTATATGGAAAACGCTATTCTGACTGCATATAAGAAGGCAAGGGAACTAAATAAAGATGGCGAAGTTCA
CCTTTTTAAAGATGAAAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MYYGSIITVLSSDKNKLTGIAEKLGKLHETAKTKIYYRKKGEYIRSILLTTEYPEKIIDLAEALSLSSTAILYIPETLTW
MDGELALLIDSLNTHNKIVISNLDQGKINNILGSLSSFTKFDLYNDIPDLSETEEEDKGIVYVDRVFTVKGVGTVVTGFS
FTNVEVHEKLVALPYNKEVEIKSIQVLDEDQKSVSTGVRIGFALKNVKEEEIEDLLYLVKPNVKVVKEIEGQITNYKWST
INQGQNHIIVKGHGIAANIKVDNQKAKIMSSVPIPIVDNRILVLNVNVRQGKPRVAGYISL

Sequences:

>Translated_301_residues
MYYGSIITVLSSDKNKLTGIAEKLGKLHETAKTKIYYRKKGEYIRSILLTTEYPEKIIDLAEALSLSSTAILYIPETLTW
MDGELALLIDSLNTHNKIVISNLDQGKINNILGSLSSFTKFDLYNDIPDLSETEEEDKGIVYVDRVFTVKGVGTVVTGFS
FTNVEVHEKLVALPYNKEVEIKSIQVLDEDQKSVSTGVRIGFALKNVKEEEIEDLLYLVKPNVKVVKEIEGQITNYKWST
INQGQNHIIVKGHGIAANIKVDNQKAKIMSSVPIPIVDNRILVLNVNVRQGKPRVAGYISL
>Mature_301_residues
MYYGSIITVLSSDKNKLTGIAEKLGKLHETAKTKIYYRKKGEYIRSILLTTEYPEKIIDLAEALSLSSTAILYIPETLTW
MDGELALLIDSLNTHNKIVISNLDQGKINNILGSLSSFTKFDLYNDIPDLSETEEEDKGIVYVDRVFTVKGVGTVVTGFS
FTNVEVHEKLVALPYNKEVEIKSIQVLDEDQKSVSTGVRIGFALKNVKEEEIEDLLYLVKPNVKVVKEIEGQITNYKWST
INQGQNHIIVKGHGIAANIKVDNQKAKIMSSVPIPIVDNRILVLNVNVRQGKPRVAGYISL

Specific function: Translation Factor Necessary For The Incorporation Of Selenocysteine Into Proteins. It Probably Replaces Ef-Tu For The Insertion Of Selenocysteine Directed By The Uga Codon. Selb Binds GTP And GDP. [C]

COG id: COG3276

COG function: function code J; Selenocysteine-specific translation elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004161
- InterPro:   IPR009000 [H]

Pfam domain/function: PF03144 GTP_EFTU_D2 [H]

EC number: NA

Molecular weight: Translated: 33641; Mature: 33641

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYGSIITVLSSDKNKLTGIAEKLGKLHETAKTKIYYRKKGEYIRSILLTTEYPEKIIDL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHEECCCCHHHHHHH
AEALSLSSTAILYIPETLTWMDGELALLIDSLNTHNKIVISNLDQGKINNILGSLSSFTK
HHHHCCCCEEEEEECCEEEECCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHH
FDLYNDIPDLSETEEEDKGIVYVDRVFTVKGVGTVVTGFSFTNVEVHEKLVALPYNKEVE
HHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEECCEECCEEEHHEEEECCCCCCEE
IKSIQVLDEDQKSVSTGVRIGFALKNVKEEEIEDLLYLVKPNVKVVKEIEGQITNYKWST
EEEEEEECCCHHHHHHCEEEEEHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEE
INQGQNHIIVKGHGIAANIKVDNQKAKIMSSVPIPIVDNRILVLNVNVRQGKPRVAGYIS
CCCCCCEEEEEECCEEEEEEECCHHHHHHHCCCCCEECCEEEEEEEEECCCCCCEEEEEE
L
C
>Mature Secondary Structure
MYYGSIITVLSSDKNKLTGIAEKLGKLHETAKTKIYYRKKGEYIRSILLTTEYPEKIIDL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHEECCCCHHHHHHH
AEALSLSSTAILYIPETLTWMDGELALLIDSLNTHNKIVISNLDQGKINNILGSLSSFTK
HHHHCCCCEEEEEECCEEEECCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHH
FDLYNDIPDLSETEEEDKGIVYVDRVFTVKGVGTVVTGFSFTNVEVHEKLVALPYNKEVE
HHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEECCEECCEEEHHEEEECCCCCCEE
IKSIQVLDEDQKSVSTGVRIGFALKNVKEEEIEDLLYLVKPNVKVVKEIEGQITNYKWST
EEEEEEECCCHHHHHHCEEEEEHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEE
INQGQNHIIVKGHGIAANIKVDNQKAKIMSSVPIPIVDNRILVLNVNVRQGKPRVAGYIS
CCCCCCEEEEEECCEEEEEEECCHHHHHHHCCCCCEECCEEEEEEEEECCCCCCEEEEEE
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]