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The map label for this gene is 15897237

Identifier: 15897237

GI number: 15897237

Start: 250020

End: 250589

Strand: Reverse

Name: 15897237

Synonym: SSO0292

Alternate gene names: NA

Gene position: 250589-250020 (Counterclockwise)

Preceding gene: 15897238

Following gene: 15897236

Centisome position: 8.37

GC content: 32.63

Gene sequence:

>570_bases
GTGAGAACTCAAGGCGAATTAACTTTACCAGGAGAGGAGTTAGCAGTAATTGAAGAATTTATGACTGGCGATGGTACGTA
TGAACAAAATGGTATAGTTAGAGCCGCAGTTGTAGGAAAGATCTTTTATGATATGCTAAATAGGAAGAGTAACGTACTAG
GATTTAAGAAAATTATATTTCAACATTTGAAGAAGGCTAAATATGTGATTGGCATTGTTAATTCTATCAAAGAAGACTCA
GCACTAGTTTCAATAGTAGGGATCGAGGAGAGAGGTCTTGCGTCACCAATTTCAGCTTACTTACATATTTCTCAAATAAG
TAATAAAAAAATTAATAATGTAACAGATGCTATAAAAATCGGAGATGTAATTAAAGCTAAATTACTTTCATACACTTTTC
CCTTGGCTTTGACCATTAAAATGAAAGATCTTGGTGTTATTTACGCTAGATGCTCAAGATGTGGATATTTATTGATTAAG
CAAGACGAAAATAATTTAAAATGTCAGAGATGCGGAAATATTGAACAACGAAAAATAGGATCTTATATGGTGAAGAAAGG
TGGAAATTAG

Upstream 100 bases:

>100_bases
ATGACCTATACAACTATGAAAAACCAGTATTAACGCCTGGAGAGGCAAAAATGATCATAAATAATAGTCTGGAACCCTAT
ATTTTTCCATGGTGAACTAA

Downstream 100 bases:

>100_bases
AATACTAAAAAGTGAAAGTAATTACTTGGAATTAGAGATAGAAGGAGAGGATCATACGTTAGGTAACTTAATTGCGGGTA
CCTTGAGGAGAATTAGTGGC

Product: exosome complex RNA-binding protein Csl4

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRTQGELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIFQHLKKAKYVIGIVNSIKEDS
ALVSIVGIEERGLASPISAYLHISQISNKKINNVTDAIKIGDVIKAKLLSYTFPLALTIKMKDLGVIYARCSRCGYLLIK
QDENNLKCQRCGNIEQRKIGSYMVKKGGN

Sequences:

>Translated_189_residues
MRTQGELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIFQHLKKAKYVIGIVNSIKEDS
ALVSIVGIEERGLASPISAYLHISQISNKKINNVTDAIKIGDVIKAKLLSYTFPLALTIKMKDLGVIYARCSRCGYLLIK
QDENNLKCQRCGNIEQRKIGSYMVKKGGN
>Mature_189_residues
MRTQGELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIFQHLKKAKYVIGIVNSIKEDS
ALVSIVGIEERGLASPISAYLHISQISNKKINNVTDAIKIGDVIKAKLLSYTFPLALTIKMKDLGVIYARCSRCGYLLIK
QDENNLKCQRCGNIEQRKIGSYMVKKGGN

Specific function: Unknown

COG id: COG1096

COG function: function code J; Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21004; Mature: 21004

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTQGELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIF
CCCCCCEECCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHH
QHLKKAKYVIGIVNSIKEDSALVSIVGIEERGLASPISAYLHISQISNKKINNVTDAIKI
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
GDVIKAKLLSYTFPLALTIKMKDLGVIYARCSRCGYLLIKQDENNLKCQRCGNIEQRKIG
HHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCHHHHHH
SYMVKKGGN
HHHHCCCCC
>Mature Secondary Structure
MRTQGELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIF
CCCCCCEECCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHH
QHLKKAKYVIGIVNSIKEDSALVSIVGIEERGLASPISAYLHISQISNKKINNVTDAIKI
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
GDVIKAKLLSYTFPLALTIKMKDLGVIYARCSRCGYLLIKQDENNLKCQRCGNIEQRKIG
HHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCHHHHHH
SYMVKKGGN
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA