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The map label for this gene is rpoL

Identifier: 15897236

GI number: 15897236

Start: 249752

End: 250030

Strand: Reverse

Name: rpoL

Synonym: SSO5577

Alternate gene names: 15897236

Gene position: 250030-249752 (Counterclockwise)

Preceding gene: 15897237

Following gene: 15897235

Centisome position: 8.36

GC content: 32.97

Gene sequence:

>279_bases
GTGGAAATTAGAATACTAAAAAGTGAAAGTAATTACTTGGAATTAGAGATAGAAGGAGAGGATCATACGTTAGGTAACTT
AATTGCGGGTACCTTGAGGAGAATTAGTGGCGTAAGTTTTGCTTCATATTATCAACCACATCCTTTATCTGATAAAATAA
TAGTTAAAATACTAACTGATGGTTCAATAACTCCTAAAGATGCCTTATTGAAAGCCATTGAAAATATAAGAGGAATGACC
TCACACTATATCGACGAAATAAAGGGATTAACCAAGTGA

Upstream 100 bases:

>100_bases
TGTGGATATTTATTGATTAAGCAAGACGAAAATAATTTAAAATGTCAGAGATGCGGAAATATTGAACAACGAAAAATAGG
ATCTTATATGGTGAAGAAAG

Downstream 100 bases:

>100_bases
AAAAGGAGACAAGGATAGCAGTATTTGTTAAAGTTAACTATTTGTATGCAATATGTGTATTTAGAGGTAACTTCTTAGAG
AAGATGTTTCTGGATATAAA

Product: DNA-directed RNA polymerase, subunit L (rpoL)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMT
SHYIDEIKGLTK

Sequences:

>Translated_92_residues
MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMT
SHYIDEIKGLTK
>Mature_92_residues
MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMT
SHYIDEIKGLTK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1761

COG function: function code K; DNA-directed RNA polymerase, subunit L

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOL_SULSO (Q980K0)

Other databases:

- EMBL:   AE006641
- PIR:   H90171
- RefSeq:   NP_341841.1
- PDB:   2PA8
- PDB:   2PMZ
- PDB:   3HKZ
- PDBsum:   2PA8
- PDBsum:   2PMZ
- PDBsum:   3HKZ
- ProteinModelPortal:   Q980K0
- SMR:   Q980K0
- GeneID:   1455441
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO5577
- NMPDR:   fig|273057.1.peg.264
- HOGENOM:   HBG726964
- OMA:   EDHTFAN
- PhylomeDB:   Q980K0
- ProtClustDB:   PRK01146
- BioCyc:   SSOL273057:SSO5577-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00261
- InterPro:   IPR011261
- InterPro:   IPR009025
- InterPro:   IPR008193
- InterPro:   IPR022905

Pfam domain/function: PF01193 RNA_pol_L; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 10285; Mature: 10285

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS01154 RNA_POL_L_13KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTD
CCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEECC
GSITPKDALLKAIENIRGMTSHYIDEIKGLTK
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTD
CCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEECC
GSITPKDALLKAIENIRGMTSHYIDEIKGLTK
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726