Click here to switch to the map view.

The map label for this gene is rpoM-like

Identifier: 15897235

GI number: 15897235

Start: 249483

End: 249755

Strand: Reverse

Name: rpoM-like

Synonym: SSO5576

Alternate gene names: NA

Gene position: 249755-249483 (Counterclockwise)

Preceding gene: 15897236

Following gene: 15897234

Centisome position: 8.35

GC content: 27.11

Gene sequence:

>273_bases
GTGAAAAAGGAGACAAGGATAGCAGTATTTGTTAAAGTTAACTATTTGTATGCAATATGTGTATTTAGAGGTAACTTCTT
AGAGAAGATGTTTCTGGATATAAATCAAGATAATCTAATTAAACAAATAACTACATCTTCCATAGTTGACGAAATCAAAT
ATTCCAATATTGGAATTGGTGAGAACTTTAAAGAACAAGTACTAGAGAAGATATGTGAAAATCTCATAAAGAAACTATCA
GAAAAGTTAAATATAGATAAAGTAAATGGTTAA

Upstream 100 bases:

>100_bases
CTGATGGTTCAATAACTCCTAAAGATGCCTTATTGAAAGCCATTGAAAATATAAGAGGAATGACCTCACACTATATCGAC
GAAATAAAGGGATTAACCAA

Downstream 100 bases:

>100_bases
GCTTGTAGCGTGATAGTAGTGAAGTTCTGTCCCAAATGTAACTCTATGATGGTTCCAAAGAAATCCAATGGCAAGAACGT
ATATAGATGTACCAAATGTG

Product: DNA-directed RNA polymerase, putative subunit M (rpoM-like)

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MKKETRIAVFVKVNYLYAICVFRGNFLEKMFLDINQDNLIKQITTSSIVDEIKYSNIGIGENFKEQVLEKICENLIKKLS
EKLNIDKVNG

Sequences:

>Translated_90_residues
MKKETRIAVFVKVNYLYAICVFRGNFLEKMFLDINQDNLIKQITTSSIVDEIKYSNIGIGENFKEQVLEKICENLIKKLS
EKLNIDKVNG
>Mature_90_residues
MKKETRIAVFVKVNYLYAICVFRGNFLEKMFLDINQDNLIKQITTSSIVDEIKYSNIGIGENFKEQVLEKICENLIKKLS
EKLNIDKVNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.6

Molecular weight: Translated: 10446; Mature: 10446

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKETRIAVFVKVNYLYAICVFRGNFLEKMFLDINQDNLIKQITTSSIVDEIKYSNIGIG
CCCCCEEEEEEEHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
ENFKEQVLEKICENLIKKLSEKLNIDKVNG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKETRIAVFVKVNYLYAICVFRGNFLEKMFLDINQDNLIKQITTSSIVDEIKYSNIGIG
CCCCCEEEEEEEHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
ENFKEQVLEKICENLIKKLSEKLNIDKVNG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA