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The map label for this gene is nusA [H]

Identifier: 15897168

GI number: 15897168

Start: 188611

End: 188985

Strand: Reverse

Name: nusA [H]

Synonym: SSO0220

Alternate gene names: 15897168

Gene position: 188985-188611 (Counterclockwise)

Preceding gene: 15897169

Following gene: 15897167

Centisome position: 6.32

GC content: 29.87

Gene sequence:

>375_bases
GTGACAAGAGCTAATGTGAGAGATTGTATTATCGATAATGAAAACAATAGGATAATATTTCTAGTAGATTCAAAAGATAT
GGGAGTCGCTATAGGTAAGAGCGGTATTAACGTTAAAAAGTTAAAGAAAATTATAGGTAAAGATATAGAACTAGTAGCTT
ATAGTGACAATTTAGAGGAATTGGTAAAAAATCTAATGAGCCCAGCTAGAGTTAGAAGTGTGAAAGTAGTAAATACTAGT
TCTAAAAAGTCAGTATATATAAATATAGATCCTCAAGATAAAGGATTAGCAATAGGTAAGAATGGTAGGAATGTAGCAAG
AGCAAAGCTAATTTTAAAGAGGTATATGGATATTGATAATGTGGTAATAGTTTAA

Upstream 100 bases:

>100_bases
AGATTCCAAAATTTTAGATATTATAAAGGAGAGGTGATTTTTTCTGCCAGAAATTAGATTAACTCCAGAGGAGATACGTT
ACATTTCCTTATTTCAAGAA

Downstream 100 bases:

>100_bases
AGGGGTTGGAAAAGGTGGTTAAAAGCAAGTCACCTAAGGGGATATACGCTGCTAGGAAGTTAAGACTAAAAAGATTAAAA
TTCAGAAGAAGTCAAAGAAA

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MTRANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTS
SKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDIDNVVIV

Sequences:

>Translated_124_residues
MTRANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTS
SKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDIDNVVIV
>Mature_123_residues
TRANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEELVKNLMSPARVRSVKVVNTSS
KKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDIDNVVIV

Specific function: Unknown

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR004044
- InterPro:   IPR010212 [H]

Pfam domain/function: PF07650 KH_2 [H]

EC number: NA

Molecular weight: Translated: 13812; Mature: 13681

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEE
CCCCCCCEEEEECCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHCCCEEEEEECCCHHH
LVKNLMSPARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDIDN
HHHHHCCCHHHEEEEEEECCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHCCCCC
VVIV
EEEC
>Mature Secondary Structure 
TRANVRDCIIDNENNRIIFLVDSKDMGVAIGKSGINVKKLKKIIGKDIELVAYSDNLEE
CCCCCCEEEEECCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHCCCEEEEEECCCHHH
LVKNLMSPARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDIDN
HHHHHCCCHHHEEEEEEECCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHCCCCC
VVIV
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2501756 [H]