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The map label for this gene is rpl30E

Identifier: 15897169

GI number: 15897169

Start: 189049

End: 189375

Strand: Reverse

Name: rpl30E

Synonym: SSO0221

Alternate gene names: 15897169

Gene position: 189375-189049 (Counterclockwise)

Preceding gene: 15897170

Following gene: 15897168

Centisome position: 6.33

GC content: 31.8

Gene sequence:

>327_bases
GTGATAAAAGTGTCAGAACAACAAGTTTCATTTGAAGGAGAGTTAAAATCACTTTTGAAAACTGGTAAAGTTATTTTTGG
TGCTAAGAGAGCGATAAAATATATAAAATTAAGTAAAGTGAAGATGGTAATTGTTGCATCGACATTAAGAGGAGATCTTA
AACAAGATATAATGCATTATGCGAAGTTATCTAACATACCTGTATATGAATACAAGGGTAGTGGCTGGGATCTTGGAACA
CTATGCGGTAAACCGTTTATGATTTCTACAATAAGTATTATTGATGAGGGAGATTCCAAAATTTTAGATATTATAAAGGA
GAGGTGA

Upstream 100 bases:

>100_bases
ATGTAGAAGAATTTAAAGGTGTAGTAGAAAACATTATAATTGGTCATCCAATTAAACTAGGTACTGGAATGGTTGAATTA
ACAATGAGGCCGATATTAAG

Downstream 100 bases:

>100_bases
TTTTTTCTGCCAGAAATTAGATTAACTCCAGAGGAGATACGTTACATTTCCTTATTTCAAGAAGTGACAAGAGCTAATGT
GAGAGATTGTATTATCGATA

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MIKVSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGT
LCGKPFMISTISIIDEGDSKILDIIKER

Sequences:

>Translated_108_residues
MIKVSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGT
LCGKPFMISTISIIDEGDSKILDIIKER
>Mature_108_residues
MIKVSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGT
LCGKPFMISTISIIDEGDSKILDIIKER

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=99, Percent_Identity=37.3737373737374, Blast_Score=75, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17508679, Length=100, Percent_Identity=33, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321408, Length=100, Percent_Identity=34, Blast_Score=63, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17864264, Length=105, Percent_Identity=37.1428571428571, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24585096, Length=105, Percent_Identity=37.1428571428571, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_SULSO (Q980R3)

Other databases:

- EMBL:   AE006641
- PIR:   E90163
- RefSeq:   NP_341774.1
- ProteinModelPortal:   Q980R3
- SMR:   Q980R3
- GeneID:   1455374
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0221
- NMPDR:   fig|273057.1.peg.197
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- PhylomeDB:   Q980R3
- ProtClustDB:   PRK01018
- BioCyc:   SSOL273057:SSO0221-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 12096; Mature: 12096

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHY
CCCCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHH
AKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKILDIIKER
HHHCCCCEEEECCCCCCHHHHCCCCCCEEEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MIKVSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHY
CCCCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHH
AKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKILDIIKER
HHHCCCCEEEECCCCCCHHHHCCCCCCEEEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726