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The map label for this gene is soxB-like [H]

Identifier: 15897138

GI number: 15897138

Start: 159972

End: 161090

Strand: Direct

Name: soxB-like [H]

Synonym: SSO0187

Alternate gene names: 15897138

Gene position: 159972-161090 (Clockwise)

Preceding gene: 15897137

Following gene: 15897141

Centisome position: 5.35

GC content: 33.33

Gene sequence:

>1119_bases
ATGATAATCATTGTTGGTGCCGGTTCCCATGGTTTAAGTTTAGCATATCATTTAGTAAAAAAGGGCTATAGTAAAAAAGA
TATTACACTAGTAGAATGGAAAAGAATCGGTTATGGGTCGAGCAGTAGAAACGCAGCTAGATACAGATATCATTTTTACA
GCAAGGAAAATGTGGAGTACGCTATAAATGCGATAAGTTATCTAAAGAAACAATCAAAGGAACTTGAGTATAATTCATTA
TTATTAAGAACTGGATATTTATGGGTCATTAACGGAGAACAAGAGTATAGTCTATTTAAAAAACTAGACAGTTTTTGGAG
CTCATATAATATAGGAGGGAAATTTATAGAATGTAAGGATAATTACGCTTACATAAAATTTGAAGGACAATGCTATTTGG
CGCCTCAAGATGGCGCATTTCATCACGATTATATACTGTACAGTTACTATTATTCGATTAAGGATAAAGTTTCTACAATT
TATGATAAAGTGGTCTCTCTAATAAAAGATGATAGCAAGATAAAAGGTGTAAAACTAAGTAGCGGAAAAGAACTATATGG
GGACAAGGTTATAGTTACTGCAGGAGCTTGGAGCGGCGAAGTGCTATCCAGTATTGGTATAGAGGTACCTATATTTCCAG
AGAAGAAAGAGATATATATCACGGAACCTTTAAGATATTTCCTCGAACCTTTAATTATAGACTCTAAGCTTCAAATCTAT
TTCTCACAGACATTGAAAGGAGAGATAATAGGTGGAATAGAAGATAAAAGGGAATACAAATTTGAGGAGTTCACAATATC
CATATCTAATGCGATAAAATTTCTCAAAGGTATAAGAGAATTAATAAAGGGAATAGATGGGATAGGAATATTAAGAGGTT
GGTCAGGGTATTATGAAATGACTCCAGATAGTTCTCAAATCATGGGATATTCTAATGATTGGCCAGAAGGTTTATTTATT
GATGCAGGTTATAGTGGTCATGGCATGATGTTTGCCCCTTACTCTGGGAAAATAATGGCTGATCTAATCGCAGACAATTA
CAAGAATAAATTCATAGATATTTTCTCGCCATCCAGATTTAAGTTAAATAAGCTAATTAACGAGACACTAGTAATTTAA

Upstream 100 bases:

>100_bases
AGAGTGTCAAGGAAAATTATGTACGTATTCTCTAGGAAGTTTTCTAGGTGATAGGCAACTTATAACGTTTAGAACTCCTC
TTTATAGAATGGTGATTTAA

Downstream 100 bases:

>100_bases
CTCATGGCATGCTGATCGCTATTTTACCTAATTTTTTGGAAATGTATTCGGCTAATTCTTTACCATAACTTCTCCTTCCT
CCATCTGTTATGATATATTT

Product: sarcosine oxidase, subunit beta (soxB-like)

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MIIIVGAGSHGLSLAYHLVKKGYSKKDITLVEWKRIGYGSSSRNAARYRYHFYSKENVEYAINAISYLKKQSKELEYNSL
LLRTGYLWVINGEQEYSLFKKLDSFWSSYNIGGKFIECKDNYAYIKFEGQCYLAPQDGAFHHDYILYSYYYSIKDKVSTI
YDKVVSLIKDDSKIKGVKLSSGKELYGDKVIVTAGAWSGEVLSSIGIEVPIFPEKKEIYITEPLRYFLEPLIIDSKLQIY
FSQTLKGEIIGGIEDKREYKFEEFTISISNAIKFLKGIRELIKGIDGIGILRGWSGYYEMTPDSSQIMGYSNDWPEGLFI
DAGYSGHGMMFAPYSGKIMADLIADNYKNKFIDIFSPSRFKLNKLINETLVI

Sequences:

>Translated_372_residues
MIIIVGAGSHGLSLAYHLVKKGYSKKDITLVEWKRIGYGSSSRNAARYRYHFYSKENVEYAINAISYLKKQSKELEYNSL
LLRTGYLWVINGEQEYSLFKKLDSFWSSYNIGGKFIECKDNYAYIKFEGQCYLAPQDGAFHHDYILYSYYYSIKDKVSTI
YDKVVSLIKDDSKIKGVKLSSGKELYGDKVIVTAGAWSGEVLSSIGIEVPIFPEKKEIYITEPLRYFLEPLIIDSKLQIY
FSQTLKGEIIGGIEDKREYKFEEFTISISNAIKFLKGIRELIKGIDGIGILRGWSGYYEMTPDSSQIMGYSNDWPEGLFI
DAGYSGHGMMFAPYSGKIMADLIADNYKNKFIDIFSPSRFKLNKLINETLVI
>Mature_372_residues
MIIIVGAGSHGLSLAYHLVKKGYSKKDITLVEWKRIGYGSSSRNAARYRYHFYSKENVEYAINAISYLKKQSKELEYNSL
LLRTGYLWVINGEQEYSLFKKLDSFWSSYNIGGKFIECKDNYAYIKFEGQCYLAPQDGAFHHDYILYSYYYSIKDKVSTI
YDKVVSLIKDDSKIKGVKLSSGKELYGDKVIVTAGAWSGEVLSSIGIEVPIFPEKKEIYITEPLRYFLEPLIIDSKLQIY
FSQTLKGEIIGGIEDKREYKFEEFTISISNAIKFLKGIRELIKGIDGIGILRGWSGYYEMTPDSSQIMGYSNDWPEGLFI
DAGYSGHGMMFAPYSGKIMADLIADNYKNKFIDIFSPSRFKLNKLINETLVI

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Drosophila melanogaster, GI20129729, Length=384, Percent_Identity=22.65625, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 42588; Mature: 42588

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIVGAGSHGLSLAYHLVKKGYSKKDITLVEWKRIGYGSSSRNAARYRYHFYSKENVEY
CEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCHHH
AINAISYLKKQSKELEYNSLLLRTGYLWVINGEQEYSLFKKLDSFWSSYNIGGKFIECKD
HHHHHHHHHHHHCCCCHHEEEEEECEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
NYAYIKFEGQCYLAPQDGAFHHDYILYSYYYSIKDKVSTIYDKVVSLIKDDSKIKGVKLS
CEEEEEECCEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
SGKELYGDKVIVTAGAWSGEVLSSIGIEVPIFPEKKEIYITEPLRYFLEPLIIDSKLQIY
CCCCCCCCEEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECHHHHHHHHHEECCEEEEE
FSQTLKGEIIGGIEDKREYKFEEFTISISNAIKFLKGIRELIKGIDGIGILRGWSGYYEM
EECCCCCEEECCCCHHHCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
TPDSSQIMGYSNDWPEGLFIDAGYSGHGMMFAPYSGKIMADLIADNYKNKFIDIFSPSRF
CCCCCCEECCCCCCCCCEEEECCCCCCCEEECCCCCCCHHHHHHCCCCCCEEEEECCCCH
KLNKLINETLVI
HHHHHHHHHCCC
>Mature Secondary Structure
MIIIVGAGSHGLSLAYHLVKKGYSKKDITLVEWKRIGYGSSSRNAARYRYHFYSKENVEY
CEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCHHH
AINAISYLKKQSKELEYNSLLLRTGYLWVINGEQEYSLFKKLDSFWSSYNIGGKFIECKD
HHHHHHHHHHHHCCCCHHEEEEEECEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
NYAYIKFEGQCYLAPQDGAFHHDYILYSYYYSIKDKVSTIYDKVVSLIKDDSKIKGVKLS
CEEEEEECCEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
SGKELYGDKVIVTAGAWSGEVLSSIGIEVPIFPEKKEIYITEPLRYFLEPLIIDSKLQIY
CCCCCCCCEEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECHHHHHHHHHEECCEEEEE
FSQTLKGEIIGGIEDKREYKFEEFTISISNAIKFLKGIRELIKGIDGIGILRGWSGYYEM
EECCCCCEEECCCCHHHCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
TPDSSQIMGYSNDWPEGLFIDAGYSGHGMMFAPYSGKIMADLIADNYKNKFIDIFSPSRF
CCCCCCEECCCCCCCCCEEEECCCCCCCEEECCCCCCCHHHHHHCCCCCCEEEEECCCCH
KLNKLINETLVI
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]