Click here to switch to the map view.

The map label for this gene is 15897052

Identifier: 15897052

GI number: 15897052

Start: 70054

End: 71214

Strand: Direct

Name: 15897052

Synonym: SSO0087

Alternate gene names: NA

Gene position: 70054-71214 (Clockwise)

Preceding gene: 15897048

Following gene: 15897060

Centisome position: 2.34

GC content: 32.99

Gene sequence:

>1161_bases
TTGCCAATGACGATCACTATACTCTATTTGGACATCTTTTTAATTTCTAAATACATTATTAGATTTGTGGATCAAATATA
CTTAGCTGTAGCGTTATTCCTATCTTTTTGGTTGATTATCTATGTTTTTAGAAGAAGACTAGAGAAATATAACCTAACAG
TCTACCCATTTTTCATATTATGGAGAAAAAAATCAAGGGAATATTGGTTTCCTAAGTTCTCCAGATCCAAAGGCTATAGA
GCTTATGAAAAAATTGCTCTACCAATAGGTTTCTTACTTATGATAGCAGGGATCGTTACAATATTATATATAATAATAGA
AATGCTAACCATCAAACCAAATCAAACTCCTACAATAGCATTAAAACCAATAATTCCAGGGGTGACGATAAGCATCTCTC
AGTTACCCTACATATTACTAGCTATTGGAGTTTCAGTAGCGATACATGAAATTTTCCACGCATTGTCCGCCACATCAAAT
AATGTAAAAGTTAAAAATGGAGGAGTTCTATTACTTGGAATATTCCCTGGAGCATTCGTAGAACCAGATGAAGATGATTT
TAATAAATCTACAAGTAATGCAAAACTTAAAATAATCGCTGCAGGAATAGTAATTAACCTAGTCTTAGCACTAATTGCAC
TTCCATTATCCTTTGAACTTCCATATTTACCTTCAGCACTCTCGCAAGGGATAATAATAGAAGGTGTGCTTAATAATACA
CCAGCAGCCAACGCATCACTTCATACCGGAGATATAATATATTCCATAAATGGTTATCGTTTAACGACATTATCTCAGCT
TCATGAACTTCTTTACAACTACAGCACTATCACTATAACTCTGAAACATCCTAATGGGAGTTTAAGTAATGTAAGTGTTA
ACATTCCTAATCATTTCTTAGGAGTTTATGTCACATACTATATTCCAGATTATATAGCTGCAATTTTAATGTTCTTCACA
TGGTTATTTATAGTGAATTTTAGCTTAGCTGTATTCAATGCCGCTCCACTAATAATAACTGATGGTGGAAAACTCCTAAC
TGAATTATTAAAGAGAATGCTAGGCGAGAGCAACGGCGAAAAAATTTCATATTACTTGCAGTCACTATTCCTTTTGATCT
TTATATTCGCAATATTTCTATCTAATCGTCCTCTAGGATAA

Upstream 100 bases:

>100_bases
CATCCCCTCGAGCTACAGAGCCATAAACGTATCCTTCCATTCCGTATTGTTTTAAAAGTGAAAGGATTTCAATTGCTATC
TTTCTCTTCTCATTTAAAAC

Downstream 100 bases:

>100_bases
CCTTACTACTTATCATGGGGAAAGGAATAACTTCTTTGATACTGTAATTATTTGTTACTAACATAACTATTCTGTCTATA
CCAATACCTAAACCTCCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase; Membrane-Associated Zn-Dependent Protease; Membrane-Associated Metalloprotease; S2P Metalloprotease; M50 Metallopeptidase; Serine Protease Htra Related Protein; Metalloprotease/Metallo Peptidase; S2P Family Metalloprotease; Metalloprotease

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MPMTITILYLDIFLISKYIIRFVDQIYLAVALFLSFWLIIYVFRRRLEKYNLTVYPFFILWRKKSREYWFPKFSRSKGYR
AYEKIALPIGFLLMIAGIVTILYIIIEMLTIKPNQTPTIALKPIIPGVTISISQLPYILLAIGVSVAIHEIFHALSATSN
NVKVKNGGVLLLGIFPGAFVEPDEDDFNKSTSNAKLKIIAAGIVINLVLALIALPLSFELPYLPSALSQGIIIEGVLNNT
PAANASLHTGDIIYSINGYRLTTLSQLHELLYNYSTITITLKHPNGSLSNVSVNIPNHFLGVYVTYYIPDYIAAILMFFT
WLFIVNFSLAVFNAAPLIITDGGKLLTELLKRMLGESNGEKISYYLQSLFLLIFIFAIFLSNRPLG

Sequences:

>Translated_386_residues
MPMTITILYLDIFLISKYIIRFVDQIYLAVALFLSFWLIIYVFRRRLEKYNLTVYPFFILWRKKSREYWFPKFSRSKGYR
AYEKIALPIGFLLMIAGIVTILYIIIEMLTIKPNQTPTIALKPIIPGVTISISQLPYILLAIGVSVAIHEIFHALSATSN
NVKVKNGGVLLLGIFPGAFVEPDEDDFNKSTSNAKLKIIAAGIVINLVLALIALPLSFELPYLPSALSQGIIIEGVLNNT
PAANASLHTGDIIYSINGYRLTTLSQLHELLYNYSTITITLKHPNGSLSNVSVNIPNHFLGVYVTYYIPDYIAAILMFFT
WLFIVNFSLAVFNAAPLIITDGGKLLTELLKRMLGESNGEKISYYLQSLFLLIFIFAIFLSNRPLG
>Mature_385_residues
PMTITILYLDIFLISKYIIRFVDQIYLAVALFLSFWLIIYVFRRRLEKYNLTVYPFFILWRKKSREYWFPKFSRSKGYRA
YEKIALPIGFLLMIAGIVTILYIIIEMLTIKPNQTPTIALKPIIPGVTISISQLPYILLAIGVSVAIHEIFHALSATSNN
VKVKNGGVLLLGIFPGAFVEPDEDDFNKSTSNAKLKIIAAGIVINLVLALIALPLSFELPYLPSALSQGIIIEGVLNNTP
AANASLHTGDIIYSINGYRLTTLSQLHELLYNYSTITITLKHPNGSLSNVSVNIPNHFLGVYVTYYIPDYIAAILMFFTW
LFIVNFSLAVFNAAPLIITDGGKLLTELLKRMLGESNGEKISYYLQSLFLLIFIFAIFLSNRPLG

Specific function: Unknown

COG id: COG0750

COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI32564635, Length=158, Percent_Identity=31.6455696202532, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43424; Mature: 43293

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50106 PDZ ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMTITILYLDIFLISKYIIRFVDQIYLAVALFLSFWLIIYVFRRRLEKYNLTVYPFFIL
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
WRKKSREYWFPKFSRSKGYRAYEKIALPIGFLLMIAGIVTILYIIIEMLTIKPNQTPTIA
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LKPIIPGVTISISQLPYILLAIGVSVAIHEIFHALSATSNNVKVKNGGVLLLGIFPGAFV
EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCC
EPDEDDFNKSTSNAKLKIIAAGIVINLVLALIALPLSFELPYLPSALSQGIIIEGVLNNT
CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCC
PAANASLHTGDIIYSINGYRLTTLSQLHELLYNYSTITITLKHPNGSLSNVSVNIPNHFL
CCCCCCEECCCEEEEECCEEEHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEECCCHHH
GVYVTYYIPDYIAAILMFFTWLFIVNFSLAVFNAAPLIITDGGKLLTELLKRMLGESNGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCC
KISYYLQSLFLLIFIFAIFLSNRPLG
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PMTITILYLDIFLISKYIIRFVDQIYLAVALFLSFWLIIYVFRRRLEKYNLTVYPFFIL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
WRKKSREYWFPKFSRSKGYRAYEKIALPIGFLLMIAGIVTILYIIIEMLTIKPNQTPTIA
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LKPIIPGVTISISQLPYILLAIGVSVAIHEIFHALSATSNNVKVKNGGVLLLGIFPGAFV
EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCC
EPDEDDFNKSTSNAKLKIIAAGIVINLVLALIALPLSFELPYLPSALSQGIIIEGVLNNT
CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCC
PAANASLHTGDIIYSINGYRLTTLSQLHELLYNYSTITITLKHPNGSLSNVSVNIPNHFL
CCCCCCEECCCEEEEECCEEEHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEECCCHHH
GVYVTYYIPDYIAAILMFFTWLFIVNFSLAVFNAAPLIITDGGKLLTELLKRMLGESNGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCC
KISYYLQSLFLLIFIFAIFLSNRPLG
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA