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The map label for this gene is pelA [H]

Identifier: 15897048

GI number: 15897048

Start: 66854

End: 67888

Strand: Direct

Name: pelA [H]

Synonym: SSO0083

Alternate gene names: 15897048

Gene position: 66854-67888 (Clockwise)

Preceding gene: 15897045

Following gene: 15897052

Centisome position: 2.23

GC content: 33.91

Gene sequence:

>1035_bases
GTGAGAATATTAGAATTTGATGAGAAACGCCAAGCTGTCAAATTACATATAGAGTCAGAAGACGATTTATGGCTTTTACA
TTTAATTTTGGAAAAAGATGATAAAGTTGTAGCAAAAACTACGAGAGACGTGGGATTAGGAAAAGAGAGTAGAAGAATAC
CTATGACCATTATCCTTAAAGTAGATTACACGGAGTTTCAAGAGTTCACAAATAGATTACGAATTCATGGAATAATAGAA
GATGCGCCTGAAAGATTTGGAATAAAGGGGGCTCATCATACAATTAATTTAGATATAGGAGACGAGATTATCATTATAAA
ACAGCAATGGAATAAGTATGTGTTAGATAGGCTTAAGAGACAAGCTAATAAGAGAAGCAGAATAATAATTGCGTTAGTGG
ACTTTGACGAATATCTAATTGCAATACCGTTTGAACAAGGGATAAAGATCCTTTCAGAGAAATCATTAAGACCATTAAAT
GAGGAAGAAGGAATAATAGAGCAAAATGCATTAGAGATTGCAACGGAGCTTGCAGAGTACGTAAAGCAATATGATCCTGA
TGCTATACTATTAGCTGGACCAGGATTCTTTAAAGAAGAAGTAAGTAAAAAGGTAAATGCTATTTTAAAGAATAAGAAGA
TTTACATCGATAGCGTATCATCTGCTACTAGAGCGGGACTTCATGAGGTTCTAAAGAGAGATATAATAGACAAGATAATG
ACAGATTATGAGATTGCGATTGGAGCTAAGAAAATGGAAAAAGCTATGGAACTCTTGGCTAAGCAGCCAGAACTAGTAAC
CTATGGCTTAGAGCAAGTAAAGAATGCTATTGAAATGGGTGCTGTAGAAACTGTTTTAGTGATTGAAGACCTATTATCCT
CAGATGAACAAGAGAGGCTAACAATCGAAAGAATGCTTGAAGATATAGAAAATAAGAGGGGGGAGGTAATATTAGTACCT
AAAGAATCACCAATCTATTTTGAATTAAAAAATCTTACTGGGATATTAGCTATTCTTAGATTTAGAATAAATTAG

Upstream 100 bases:

>100_bases
GATAAGGATCTTCGAAACTTTCCGTTTCTATTTGAAAAATCTGATCTAAATCTGCCTCTGTTGCATCAGTTATAATTACC
ATGCTATGAAACTTTAATTT

Downstream 100 bases:

>100_bases
CTTCTCTCCTACTCTTAATCTTCGGGAATCAGGATGTTCTTCAACTATATAAATTTCATTTATTAAATTAGTGTAATCAT
TTAGAAGATCTCCGACAATA

Product: cell division protein pelota homolog (pelA)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MRILEFDEKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGLGKESRRIPMTIILKVDYTEFQEFTNRLRIHGIIE
DAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLN
EEEGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDKIM
TDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVP
KESPIYFELKNLTGILAILRFRIN

Sequences:

>Translated_344_residues
MRILEFDEKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGLGKESRRIPMTIILKVDYTEFQEFTNRLRIHGIIE
DAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLN
EEEGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDKIM
TDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVP
KESPIYFELKNLTGILAILRFRIN
>Mature_344_residues
MRILEFDEKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGLGKESRRIPMTIILKVDYTEFQEFTNRLRIHGIIE
DAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLN
EEEGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDKIM
TDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVP
KESPIYFELKNLTGILAILRFRIN

Specific function: May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has end

COG id: COG1537

COG function: function code R; Predicted RNA-binding proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic release factor 1 family. Pelota subfamily [H]

Homologues:

Organism=Homo sapiens, GI31880783, Length=357, Percent_Identity=23.8095238095238, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17554648, Length=355, Percent_Identity=23.0985915492958, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324327, Length=369, Percent_Identity=23.5772357723577, Blast_Score=63, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136914, Length=356, Percent_Identity=26.123595505618, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005140
- InterPro:   IPR005141
- InterPro:   IPR005142
- InterPro:   IPR016040
- InterPro:   IPR004405 [H]

Pfam domain/function: PF03463 eRF1_1; PF03464 eRF1_2; PF03465 eRF1_3 [H]

EC number: NA

Molecular weight: Translated: 39631; Mature: 39631

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILEFDEKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGLGKESRRIPMTIILK
CCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEHHHHCCCCCCCCCCCEEEEEE
VDYTEFQEFTNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKR
ECHHHHHHHHHHEEEEEEHHCCHHHCCCCCCCEEEEEECCCEEEEEHHHCCHHHHHHHHH
QANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLNEEEGIIEQNALEIATELAEY
HCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
VKQYDPDAILLAGPGFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDKIM
HHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
TDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERL
CCHHHEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHH
TIERMLEDIENKRGEVILVPKESPIYFELKNLTGILAILRFRIN
HHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRILEFDEKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGLGKESRRIPMTIILK
CCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEHHHHCCCCCCCCCCCEEEEEE
VDYTEFQEFTNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKR
ECHHHHHHHHHHEEEEEEHHCCHHHCCCCCCCEEEEEECCCEEEEEHHHCCHHHHHHHHH
QANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLNEEEGIIEQNALEIATELAEY
HCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
VKQYDPDAILLAGPGFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDKIM
HHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
TDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERL
CCHHHEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHH
TIERMLEDIENKRGEVILVPKESPIYFELKNLTGILAILRFRIN
HHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA