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The map label for this gene is ydcM [C]

Identifier: 15896978

GI number: 15896978

Start: 4500

End: 5348

Strand: Direct

Name: ydcM [C]

Synonym: SSO0008

Alternate gene names: 15896978

Gene position: 4500-5348 (Clockwise)

Preceding gene: 15896977

Following gene: 15896980

Centisome position: 0.15

GC content: 34.51

Gene sequence:

>849_bases
ATGAAGGAGAGTCTCATAGAAGCAAAAGTTATGGATTATGGTAAACTAAAGGACATTCAAAAGGAAATTTTATATTACAA
GCTCTATGTTGACGCATTGAAAAAGAAAGGGATTAAGGAAAAAGTGGACCCACCCCCTACCTTGCCCAAATCTATTGTAT
CTTCAGTGCTCACTGGAGGAATCCCTAGAGATGGCCCACTACAGATAGAATTAGTTAGTAATGATGTAGTAAAGATAAAG
GAGTATAACACTTTAGTAAAAATACAGAGTGATTCTAGGCTACCGTTATATGCCATAGTAGAGTACAGGGATACTGATAT
AAGGGTTTATTTAGCTTATCGAGAGAATCCTAGCATAGTTGGATTAGACCTAGGCTTACGGCATCTAATAACAATTGTTG
CAATAAAAGATACCAAACCATGGAAAGTGAGATTCTTTGATGAGCCTAAACTTATGGAGAAATTTGCAAATTTCTTAAGT
GAAAATCAAGGAATTATTAAGTTAGAAGAAATGAAGAGTAACGCTAAAAGAATTATTTACGAAGCTGTAAGCTTTATTGA
AGATTTAGAACCAAAAGTAGTTGCGATGGAGAATTTGGAATATTTTGAGACCAAAACGGGTAAAGGATTAAGAGCTTTAC
AGAATATGCTAGAGAACGAAATACGAAGAAGAGGTATTAGATATAGAAAAATAGACCCATATAACACATCAAGGGTATGT
GCAAAGTGTGGATACAAGAAAGGTGAAATATTAGGCTCGCTATTTGTATGTCCAGCATGTGGATATAAAGCGGATAGAGA
TTATAACGCAGCATATAATATAGCACTAAAATGTTATTACACTTGCTAA

Upstream 100 bases:

>100_bases
AATATTATCTAGGAGTAGATGCAGAGGAACTTATAATGGGAAGTATTATACATCTTTAAGAGGTATAAATTCTTAAGCAT
GAAGATTATAATATTTATTT

Downstream 100 bases:

>100_bases
TACTAAATACTCCAATAATTCCTCAAAATATTCTTCTCTTCACTCAGATAATTCATAAATCTGGATCTCACCGAATCGTT
TGACTGATATTTTTTATACT

Product: IS605-TnpB family transposase

Products: NA

Alternate protein names: Inactivated Transposase

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKESLIEAKVMDYGKLKDIQKEILYYKLYVDALKKKGIKEKVDPPPTLPKSIVSSVLTGGIPRDGPLQIELVSNDVVKIK
EYNTLVKIQSDSRLPLYAIVEYRDTDIRVYLAYRENPSIVGLDLGLRHLITIVAIKDTKPWKVRFFDEPKLMEKFANFLS
ENQGIIKLEEMKSNAKRIIYEAVSFIEDLEPKVVAMENLEYFETKTGKGLRALQNMLENEIRRRGIRYRKIDPYNTSRVC
AKCGYKKGEILGSLFVCPACGYKADRDYNAAYNIALKCYYTC

Sequences:

>Translated_282_residues
MKESLIEAKVMDYGKLKDIQKEILYYKLYVDALKKKGIKEKVDPPPTLPKSIVSSVLTGGIPRDGPLQIELVSNDVVKIK
EYNTLVKIQSDSRLPLYAIVEYRDTDIRVYLAYRENPSIVGLDLGLRHLITIVAIKDTKPWKVRFFDEPKLMEKFANFLS
ENQGIIKLEEMKSNAKRIIYEAVSFIEDLEPKVVAMENLEYFETKTGKGLRALQNMLENEIRRRGIRYRKIDPYNTSRVC
AKCGYKKGEILGSLFVCPACGYKADRDYNAAYNIALKCYYTC
>Mature_282_residues
MKESLIEAKVMDYGKLKDIQKEILYYKLYVDALKKKGIKEKVDPPPTLPKSIVSSVLTGGIPRDGPLQIELVSNDVVKIK
EYNTLVKIQSDSRLPLYAIVEYRDTDIRVYLAYRENPSIVGLDLGLRHLITIVAIKDTKPWKVRFFDEPKLMEKFANFLS
ENQGIIKLEEMKSNAKRIIYEAVSFIEDLEPKVVAMENLEYFETKTGKGLRALQNMLENEIRRRGIRYRKIDPYNTSRVC
AKCGYKKGEILGSLFVCPACGYKADRDYNAAYNIALKCYYTC

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32450; Mature: 32450

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKESLIEAKVMDYGKLKDIQKEILYYKLYVDALKKKGIKEKVDPPPTLPKSIVSSVLTGG
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
IPRDGPLQIELVSNDVVKIKEYNTLVKIQSDSRLPLYAIVEYRDTDIRVYLAYRENPSIV
CCCCCCEEEEEECCCEEEEEECCEEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCEE
GLDLGLRHLITIVAIKDTKPWKVRFFDEPKLMEKFANFLSENQGIIKLEEMKSNAKRIIY
EECCCHHHEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
EAVSFIEDLEPKVVAMENLEYFETKTGKGLRALQNMLENEIRRRGIRYRKIDPYNTSRVC
HHHHHHHHCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH
AKCGYKKGEILGSLFVCPACGYKADRDYNAAYNIALKCYYTC
HHCCCCCHHHHHHEEECCCCCCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MKESLIEAKVMDYGKLKDIQKEILYYKLYVDALKKKGIKEKVDPPPTLPKSIVSSVLTGG
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
IPRDGPLQIELVSNDVVKIKEYNTLVKIQSDSRLPLYAIVEYRDTDIRVYLAYRENPSIV
CCCCCCEEEEEECCCEEEEEECCEEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCEE
GLDLGLRHLITIVAIKDTKPWKVRFFDEPKLMEKFANFLSENQGIIKLEEMKSNAKRIIY
EECCCHHHEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
EAVSFIEDLEPKVVAMENLEYFETKTGKGLRALQNMLENEIRRRGIRYRKIDPYNTSRVC
HHHHHHHHCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH
AKCGYKKGEILGSLFVCPACGYKADRDYNAAYNIALKCYYTC
HHCCCCCHHHHHHEEECCCCCCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA