| Definition | Caulobacter crescentus CB15 chromosome, complete genome. |
|---|---|
| Accession | NC_002696 |
| Length | 4,016,947 |
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The map label for this gene is viuA [H]
Identifier: 16127566
GI number: 16127566
Start: 3580379
End: 3582547
Strand: Direct
Name: viuA [H]
Synonym: CC_3336
Alternate gene names: 16127566
Gene position: 3580379-3582547 (Clockwise)
Preceding gene: 16127565
Following gene: 16127567
Centisome position: 89.13
GC content: 64.78
Gene sequence:
>2169_bases GTGATCGACGGCGTGTACCGCCCCCGCAACGGCGTCGGCTTCGGCGACCTGGGCGAAATGGAGCGCATCGAAGTGCTGAA GGGGCCGCAAGGCACCCTGTTCGGCAAGAACACCTCGGCCGGCGTGATCAACGTCGTCACCAAGGAGCCGGAGTTCGGCT TCGGGGCCAGCGCCGAAGTGACCCTTGGCAACTACGACGCCAAGGGCGTGGCCGCCTCGGTCACCGGTCCGCTGATGGGC GACAAGCTGGCCGGCCGCCTGTACGTCGCGGCCCGCGAGCGTGACGGTTTCAACGACGTGATCGTGGGCGCCGGTCCGTC CGCCCGCAAGCAGGACGCCGACCAGAACTTCTACACGGTGCGCGGGCAGTTGCTGTTCATCCCCGATGACCAAGCGACTT TCCGGTTCATCGCCGACTACAGCCGTCGCGACGAAAACTGCTGCGGCGCGGTGCAGATCCGCACCGGTCCGACGGCCGGC ATTCTGAATCTGCTCTCGGGCGGAACCGCGCTGGCTCCCACCGCCAATCCATACGATCGGGTCGCCTACTCGAACCGCGG AGCGCCCGCCAAGATCGAGGACAAGGGCGTCTCGCTCCAAGGCGACATCGACCTGCCGATCGGCACGCTGACCAGCATTT CGGCCATTCGCCAATGGCGCACCGACAACGGTCAGGACTCCGACTTCACCACCGCCGACATCACCTATCGCAACAAGGAC GGCACGAACTATTCGGAGTTCACGACCTACAGCCAGGAACTGCGCCTGGCCGGCAAGTCGGACAAGTTCGACTGGATGAT CGGCGCCTTCCTCGCCGACGAGCGACTTGAGAACCGCGCCAACTTCCTGTTCGGCAACCAGTACGAACAGTATCTGGGCC GCCTCCTGTCCCGTTCAGCGGCCAACCCGGCGGGCATCCCCAACTTCATCGCCCTGCTCTTGAACCGTGCGCCGAACACC TCGTTCACGCCGGGCCAAGGCCTCTACGATCGTTATGATCAACGCGCCAAGACGGTGGCTCTGTTCACCAACGAAACCTG GCACGTGACGGACGCGTTCGAGATCACCGCCGGTCTGCGCTACACCGTGGAAAAGAAGGACCTCGCCACGTTCCAGACCA ACAGCGATGGCGGCGTCGGCTGCGGCACGGCCCTGACCCCGGCCGGTCAAGCTCGGATGGCGGGCATTGTCGGCGCGGCT GCGGTCGGCACTATCGTCGGCAACCTCTGCCTGCCTTGGGCCAATCCGCTGTTCAACGGCCGCGGCACCAGCCAGGAGCG GACGGACAAGGAGTGGAGCGGCACCATCAAGGCGTCGTACCGCTTCTCGCCGGAAGTGTTCACCTACGCCTCGTTCGCGC GCGGCTATAAGGGCGGCGGCTTCAACCTCGATCGCACCCAGTCCTCGAACGGCCTGCCGTCGGGCGGCTCGGGCGTGACG CCGATCTACGATACGTCGTTCCCGGCTGAGTTCGTCGACAGCTACGAGCTGGGCATGAAGAACACCCTGTTCAACCGCTC GGTTCTGTTCAACGTCAGCCTCTTCCAGCAGAAGTTCACCGACTTCCAGCTGAACACCTTCCTGGGCACCTCGTTCGTGG TGCGCTCGATCCCCGAGGTGACGTCGAAGGGTGTCGACGCCGACTTCATGTGGTTCACGCCGGTGCGCGGCCTGGTCATC CAGAGCGGCTTCACCTACGCCGACACCAAGTACGGCAAGCAACCGATCCCGAACGATCCGGGCAACGCCCTGGCCCTTCT GCCCGGCAGCAACCTGTCGCTGGCGCCGAAGTACTCGGGCTCGGCCTCGGTGACCTATGAGGCTTCGGTCGGCGACAACC TGAAGGCTCGCTTCAACATCGGCGCGAAGTACTCCTCGGAGTACAACACCGGCTCCGACCTGTTCCCGCCGAAGCTCCAG AAGGCCTTCACGGTGGTCAACGGCCGCGTCGGCCTGGGCAGCGACGACGAGCGCTGGGCCGTCGAACTGTGGGCCCAGAA CCTTCTGAACGAGAAATACATGCAGGTGGCCTTCAACGGCCCGCTGCAAGGCGGCTCGGGTCTCAGCGCCACTCAGAACA CCTATAATCCGGCCCTGGACACGATCACCTACAACGCGTTCCTGGGCGCGCCGCGTACCTACGGCGTGACCCTGCGCTCG AAGTTCTAG
Upstream 100 bases:
>100_bases GACGGTCACGTCCACCTCGTCGGAAGCCTCGACGACCGCCCGCGTCCGCGGCGTCGGCACCGTCGGTGACAACCCCGGCC TGGAAAGCTCGGTCGGCGTC
Downstream 100 bases:
>100_bases TTCTGCCGGGAGGGGGACCGGCGGCGCCAGCCGCGCCGCCGGCTTTCGGAAGAAGAAAGGGCGATCCGCTTGGCGGGTCG CCCTTTTTCCTTGTCCGGAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 722; Mature: 722
Protein sequence:
>722_residues MIDGVYRPRNGVGFGDLGEMERIEVLKGPQGTLFGKNTSAGVINVVTKEPEFGFGASAEVTLGNYDAKGVAASVTGPLMG DKLAGRLYVAARERDGFNDVIVGAGPSARKQDADQNFYTVRGQLLFIPDDQATFRFIADYSRRDENCCGAVQIRTGPTAG ILNLLSGGTALAPTANPYDRVAYSNRGAPAKIEDKGVSLQGDIDLPIGTLTSISAIRQWRTDNGQDSDFTTADITYRNKD GTNYSEFTTYSQELRLAGKSDKFDWMIGAFLADERLENRANFLFGNQYEQYLGRLLSRSAANPAGIPNFIALLLNRAPNT SFTPGQGLYDRYDQRAKTVALFTNETWHVTDAFEITAGLRYTVEKKDLATFQTNSDGGVGCGTALTPAGQARMAGIVGAA AVGTIVGNLCLPWANPLFNGRGTSQERTDKEWSGTIKASYRFSPEVFTYASFARGYKGGGFNLDRTQSSNGLPSGGSGVT PIYDTSFPAEFVDSYELGMKNTLFNRSVLFNVSLFQQKFTDFQLNTFLGTSFVVRSIPEVTSKGVDADFMWFTPVRGLVI QSGFTYADTKYGKQPIPNDPGNALALLPGSNLSLAPKYSGSASVTYEASVGDNLKARFNIGAKYSSEYNTGSDLFPPKLQ KAFTVVNGRVGLGSDDERWAVELWAQNLLNEKYMQVAFNGPLQGGSGLSATQNTYNPALDTITYNAFLGAPRTYGVTLRS KF
Sequences:
>Translated_722_residues MIDGVYRPRNGVGFGDLGEMERIEVLKGPQGTLFGKNTSAGVINVVTKEPEFGFGASAEVTLGNYDAKGVAASVTGPLMG DKLAGRLYVAARERDGFNDVIVGAGPSARKQDADQNFYTVRGQLLFIPDDQATFRFIADYSRRDENCCGAVQIRTGPTAG ILNLLSGGTALAPTANPYDRVAYSNRGAPAKIEDKGVSLQGDIDLPIGTLTSISAIRQWRTDNGQDSDFTTADITYRNKD GTNYSEFTTYSQELRLAGKSDKFDWMIGAFLADERLENRANFLFGNQYEQYLGRLLSRSAANPAGIPNFIALLLNRAPNT SFTPGQGLYDRYDQRAKTVALFTNETWHVTDAFEITAGLRYTVEKKDLATFQTNSDGGVGCGTALTPAGQARMAGIVGAA AVGTIVGNLCLPWANPLFNGRGTSQERTDKEWSGTIKASYRFSPEVFTYASFARGYKGGGFNLDRTQSSNGLPSGGSGVT PIYDTSFPAEFVDSYELGMKNTLFNRSVLFNVSLFQQKFTDFQLNTFLGTSFVVRSIPEVTSKGVDADFMWFTPVRGLVI QSGFTYADTKYGKQPIPNDPGNALALLPGSNLSLAPKYSGSASVTYEASVGDNLKARFNIGAKYSSEYNTGSDLFPPKLQ KAFTVVNGRVGLGSDDERWAVELWAQNLLNEKYMQVAFNGPLQGGSGLSATQNTYNPALDTITYNAFLGAPRTYGVTLRS KF >Mature_722_residues MIDGVYRPRNGVGFGDLGEMERIEVLKGPQGTLFGKNTSAGVINVVTKEPEFGFGASAEVTLGNYDAKGVAASVTGPLMG DKLAGRLYVAARERDGFNDVIVGAGPSARKQDADQNFYTVRGQLLFIPDDQATFRFIADYSRRDENCCGAVQIRTGPTAG ILNLLSGGTALAPTANPYDRVAYSNRGAPAKIEDKGVSLQGDIDLPIGTLTSISAIRQWRTDNGQDSDFTTADITYRNKD GTNYSEFTTYSQELRLAGKSDKFDWMIGAFLADERLENRANFLFGNQYEQYLGRLLSRSAANPAGIPNFIALLLNRAPNT SFTPGQGLYDRYDQRAKTVALFTNETWHVTDAFEITAGLRYTVEKKDLATFQTNSDGGVGCGTALTPAGQARMAGIVGAA AVGTIVGNLCLPWANPLFNGRGTSQERTDKEWSGTIKASYRFSPEVFTYASFARGYKGGGFNLDRTQSSNGLPSGGSGVT PIYDTSFPAEFVDSYELGMKNTLFNRSVLFNVSLFQQKFTDFQLNTFLGTSFVVRSIPEVTSKGVDADFMWFTPVRGLVI QSGFTYADTKYGKQPIPNDPGNALALLPGSNLSLAPKYSGSASVTYEASVGDNLKARFNIGAKYSSEYNTGSDLFPPKLQ KAFTVVNGRVGLGSDDERWAVELWAQNLLNEKYMQVAFNGPLQGGSGLSATQNTYNPALDTITYNAFLGAPRTYGVTLRS KF
Specific function: Receptor for ferric vibriobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 78161; Mature: 78161
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDGVYRPRNGVGFGDLGEMERIEVLKGPQGTLFGKNTSAGVINVVTKEPEFGFGASAEV CCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCEEE TLGNYDAKGVAASVTGPLMGDKLAGRLYVAARERDGFNDVIVGAGPSARKQDADQNFYTV EECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEE RGQLLFIPDDQATFRFIADYSRRDENCCGAVQIRTGPTAGILNLLSGGTALAPTANPYDR EEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCEECCCCCCHHH VAYSNRGAPAKIEDKGVSLQGDIDLPIGTLTSISAIRQWRTDNGQDSDFTTADITYRNKD HHCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC GTNYSEFTTYSQELRLAGKSDKFDWMIGAFLADERLENRANFLFGNQYEQYLGRLLSRSA CCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHCC ANPAGIPNFIALLLNRAPNTSFTPGQGLYDRYDQRAKTVALFTNETWHVTDAFEITAGLR CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEECCEEEEEEHEEEECCCE YTVEKKDLATFQTNSDGGVGCGTALTPAGQARMAGIVGAAAVGTIVGNLCLPWANPLFNG EEEECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC RGTSQERTDKEWSGTIKASYRFSPEVFTYASFARGYKGGGFNLDRTQSSNGLPSGGSGVT CCCCCHHCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PIYDTSFPAEFVDSYELGMKNTLFNRSVLFNVSLFQQKFTDFQLNTFLGTSFVVRSIPEV CCCCCCCCHHHHHHHHCCCCHHHCCCEEEEEHHHHHHHCCCEEEHHHHHHHHHHHHHHHH TSKGVDADFMWFTPVRGLVIQSGFTYADTKYGKQPIPNDPGNALALLPGSNLSLAPKYSG HHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCC SASVTYEASVGDNLKARFNIGAKYSSEYNTGSDLFPPKLQKAFTVVNGRVGLGSDDERWA CEEEEEEECCCCCCEEEEEECCEECCCCCCCCCCCCHHHHHHEEEECCEECCCCCCCHHH VELWAQNLLNEKYMQVAFNGPLQGGSGLSATQNTYNPALDTITYNAFLGAPRTYGVTLRS HHHHHHHHHCHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHEEEEHEECCCCEEEEEEEE KF CC >Mature Secondary Structure MIDGVYRPRNGVGFGDLGEMERIEVLKGPQGTLFGKNTSAGVINVVTKEPEFGFGASAEV CCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCEEE TLGNYDAKGVAASVTGPLMGDKLAGRLYVAARERDGFNDVIVGAGPSARKQDADQNFYTV EECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEE RGQLLFIPDDQATFRFIADYSRRDENCCGAVQIRTGPTAGILNLLSGGTALAPTANPYDR EEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCEECCCCCCHHH VAYSNRGAPAKIEDKGVSLQGDIDLPIGTLTSISAIRQWRTDNGQDSDFTTADITYRNKD HHCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC GTNYSEFTTYSQELRLAGKSDKFDWMIGAFLADERLENRANFLFGNQYEQYLGRLLSRSA CCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHCC ANPAGIPNFIALLLNRAPNTSFTPGQGLYDRYDQRAKTVALFTNETWHVTDAFEITAGLR CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEECCEEEEEEHEEEECCCE YTVEKKDLATFQTNSDGGVGCGTALTPAGQARMAGIVGAAAVGTIVGNLCLPWANPLFNG EEEECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC RGTSQERTDKEWSGTIKASYRFSPEVFTYASFARGYKGGGFNLDRTQSSNGLPSGGSGVT CCCCCHHCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PIYDTSFPAEFVDSYELGMKNTLFNRSVLFNVSLFQQKFTDFQLNTFLGTSFVVRSIPEV CCCCCCCCHHHHHHHHCCCCHHHCCCEEEEEHHHHHHHCCCEEEHHHHHHHHHHHHHHHH TSKGVDADFMWFTPVRGLVIQSGFTYADTKYGKQPIPNDPGNALALLPGSNLSLAPKYSG HHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCC SASVTYEASVGDNLKARFNIGAKYSSEYNTGSDLFPPKLQKAFTVVNGRVGLGSDDERWA CEEEEEEECCCCCCEEEEEECCEECCCCCCCCCCCCHHHHHHEEEECCEECCCCCCCHHH VELWAQNLLNEKYMQVAFNGPLQGGSGLSATQNTYNPALDTITYNAFLGAPRTYGVTLRS HHHHHHHHHCHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHEEEEHEECCCCEEEEEEEE KF CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1317381 [H]