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The map label for this gene is yhdW [H]

Identifier: 16127402

GI number: 16127402

Start: 3416895

End: 3417782

Strand: Direct

Name: yhdW [H]

Synonym: CC_3172

Alternate gene names: 16127402

Gene position: 3416895-3417782 (Clockwise)

Preceding gene: 16127400

Following gene: 16127407

Centisome position: 85.06

GC content: 70.05

Gene sequence:

>888_bases
ATGGTCGTGGCCCATCGCGGCTGCCACGCCGCAGCGCCGGATCACGGCCTGGCGTCGAGCGCCCCCGAGAACTCTCTGGA
AGCCCTGCAGCGTTGCATCGACATCGGCGTCGACATGGTCGAGACCGATGTGCGCCGCACCCAGGACGGCGTCCTGGTGA
TCATGCACGACCCCAGCGTCGACCGAACCACCGATGGCGGCGGCCTGGTCGCCAAGCTGACGCTCGCCCAGATCCAGGCG
CTTCGGCTCGACGGCGGCGATGAGGCGCCGCCGACGCTGGAAGCCTTCCTCCGCGCCGCGCGTGGCCGTGTTCTGGTGAA
CCTTCATCTGAAGGGCCCCTTCGCGGCCCAGGCGGCGGAAGTCGCGCGCCGCGCCGACGCGAGCGACTGGGTGCTGTTCA
AGGCCCGGGCGAAGACAGACATGTCTCCGATCGCCGATCAGCCGCTCTATCGCGATGTCGCCTTCATGCCGATGGTCGGC
GAAGGCGCTGCGCGGGACGCGGGGCAGTTGGGCCAGGTCATCACCCGCCAGGCCTCCGGCATTCGTCCTATTCCGGCTGT
GGAGACGCGCCGCATGGGCGCGCAAGGCTTCGCCTCGGTGCGCGACGCCGCCGAAGCCGCCCGGGTTCGCGTCTGGGCCA
ACACCCTGGGCATGAGCAGCTGGAAAAGCTTCTTCGGCGTCTCGGGCGATCGCCGCGCGCTGCGCGATCCGGACACCTCC
TGGGGCCGCCTGATCGACCAGGGCGTCAGCATCATCCAGACCGATCACCCGGCGCGCCTCTTGGGCTATCTGAAAAGCCG
TCGCCTTCGGGACGGCGTGACCATCGCCACGATCGGCGAGGCCTCCCCGTCCTCGACCACGCACGCCGCTCTGGCCGGAA
CGCGGTAG

Upstream 100 bases:

>100_bases
GCGCCTCCTGACGACCTCCCTCGCCTTGCTGCTCATCGCCGCCACGCCGGCGGGGGCCAACACGTTCCGGGAACGCCTCT
ATGATCCCGCCGCCGGGGTC

Downstream 100 bases:

>100_bases
GCGGGGGGCGCTTACCCGACACCCCACAAGCCCTAGACGCGCGCGCTCGCACAGAAGCGGCGGTCTCGACTTGGCTTTTT
CAGGGAAATCTGTCCGTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MVVAHRGCHAAAPDHGLASSAPENSLEALQRCIDIGVDMVETDVRRTQDGVLVIMHDPSVDRTTDGGGLVAKLTLAQIQA
LRLDGGDEAPPTLEAFLRAARGRVLVNLHLKGPFAAQAAEVARRADASDWVLFKARAKTDMSPIADQPLYRDVAFMPMVG
EGAARDAGQLGQVITRQASGIRPIPAVETRRMGAQGFASVRDAAEAARVRVWANTLGMSSWKSFFGVSGDRRALRDPDTS
WGRLIDQGVSIIQTDHPARLLGYLKSRRLRDGVTIATIGEASPSSTTHAALAGTR

Sequences:

>Translated_295_residues
MVVAHRGCHAAAPDHGLASSAPENSLEALQRCIDIGVDMVETDVRRTQDGVLVIMHDPSVDRTTDGGGLVAKLTLAQIQA
LRLDGGDEAPPTLEAFLRAARGRVLVNLHLKGPFAAQAAEVARRADASDWVLFKARAKTDMSPIADQPLYRDVAFMPMVG
EGAARDAGQLGQVITRQASGIRPIPAVETRRMGAQGFASVRDAAEAARVRVWANTLGMSSWKSFFGVSGDRRALRDPDTS
WGRLIDQGVSIIQTDHPARLLGYLKSRRLRDGVTIATIGEASPSSTTHAALAGTR
>Mature_295_residues
MVVAHRGCHAAAPDHGLASSAPENSLEALQRCIDIGVDMVETDVRRTQDGVLVIMHDPSVDRTTDGGGLVAKLTLAQIQA
LRLDGGDEAPPTLEAFLRAARGRVLVNLHLKGPFAAQAAEVARRADASDWVLFKARAKTDMSPIADQPLYRDVAFMPMVG
EGAARDAGQLGQVITRQASGIRPIPAVETRRMGAQGFASVRDAAEAARVRVWANTLGMSSWKSFFGVSGDRRALRDPDTS
WGRLIDQGVSIIQTDHPARLLGYLKSRRLRDGVTIATIGEASPSSTTHAALAGTR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=131, Percent_Identity=36.6412213740458, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 31502; Mature: 31502

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVAHRGCHAAAPDHGLASSAPENSLEALQRCIDIGVDMVETDVRRTQDGVLVIMHDPSV
CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCC
DRTTDGGGLVAKLTLAQIQALRLDGGDEAPPTLEAFLRAARGRVLVNLHLKGPFAAQAAE
CCCCCCCCEEEHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHH
VARRADASDWVLFKARAKTDMSPIADQPLYRDVAFMPMVGEGAARDAGQLGQVITRQASG
HHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
IRPIPAVETRRMGAQGFASVRDAAEAARVRVWANTLGMSSWKSFFGVSGDRRALRDPDTS
CCCCCCHHHHHCCHHHHHHHHHHHHHHHEEHHHHHHCHHHHHHHHCCCCCCCCCCCCCCH
WGRLIDQGVSIIQTDHPARLLGYLKSRRLRDGVTIATIGEASPSSTTHAALAGTR
HHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MVVAHRGCHAAAPDHGLASSAPENSLEALQRCIDIGVDMVETDVRRTQDGVLVIMHDPSV
CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCC
DRTTDGGGLVAKLTLAQIQALRLDGGDEAPPTLEAFLRAARGRVLVNLHLKGPFAAQAAE
CCCCCCCCEEEHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHH
VARRADASDWVLFKARAKTDMSPIADQPLYRDVAFMPMVGEGAARDAGQLGQVITRQASG
HHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
IRPIPAVETRRMGAQGFASVRDAAEAARVRVWANTLGMSSWKSFFGVSGDRRALRDPDTS
CCCCCCHHHHHCCHHHHHHHHHHHHHHHEEHHHHHHCHHHHHHHHCCCCCCCCCCCCCCH
WGRLIDQGVSIIQTDHPARLLGYLKSRRLRDGVTIATIGEASPSSTTHAALAGTR
HHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]