| Definition | Caulobacter crescentus CB15 chromosome, complete genome. |
|---|---|
| Accession | NC_002696 |
| Length | 4,016,947 |
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The map label for this gene is viuA [H]
Identifier: 16127391
GI number: 16127391
Start: 3405975
End: 3408788
Strand: Direct
Name: viuA [H]
Synonym: CC_3161
Alternate gene names: 16127391
Gene position: 3405975-3408788 (Clockwise)
Preceding gene: 16127386
Following gene: 16127392
Centisome position: 84.79
GC content: 63.82
Gene sequence:
>2814_bases ATGTCGCAAACTCTGCGTATGCGGAGCCTATTGGTCATGGGCGCTTCGGCGGTCGCGATCTCCGGCTTCGCTGTCCCCGC GTTCGCTCAACAGAACACGACCGTCATCGAAGAGCTGGTCGTTACAGCTCAGAAAAAGGAAGAAGCGCTGCAGGACGTGC CGATCGCGGTGTCGGCCTTCAGCCAGGACAGCCTGGAAGCGCAGAAGATCGACGGCGGCCCCAACCTGCAGTTGGCGATT CCGAACGTCACCTTCGCCAAGAGCAACTTCACCAACAGCTTCAACTTCCAGATCCGCGGCATCGGCGCCAAGGCCGTGGG CGCGTCCGCCGACCAGGGCGTCGGTGTGCACATGAACAACGCCCCGCAGCAGTCGGGCAATCTGTTCGAAGCCGAGTTCT ACGATGTCGAGCGCGTCGAAGTGCTGCGCGGGCCGCAGGGCACGCTGTATGGCCGCAACGCCACCGGCGGCGTGGTCAAT GTGATCACGGCCAAGCCGACCGACATGTTCGAGGCCAACCTTCGCGCCGAGTACGGCAACTACAATTCGATGAAGCTGCG CGGCATGCTGAACGTGCCGATCTTCGGCGACAAGCTGGCCGTGCGCCTGTCCGGAACCTCGCTGAAGCGCGACGGCTTCG TGACCAACACCTTCAATGGCAACAAGGTCGACGACCGGGATCTGTATTCGACCCGGGTCCAGGTGATGTTCAATCCGACC GAGAAGCTGCGCACCAACTTCCTGTGGGAACGCTTCCACGAGAACGACAGCCGCGCCCGCACCGGCAAGCAGCTCTGCAC CAAGGACAACGGTCCGGCCACGGTCGGCGGCGTGCCAACCGGGGCGTCTCGCGTTTTCCTGACCCAGGGCTGCCTTTCGG CCTCGCTCTATACGCCAGCGGCCTACGGCACGGTGAACACCTCGGGATCGCTGACGGGTCTGCTCGGCAACATCTTCGGC TTCACCTCGGGTGACGTGAACGCCGGCGACACCACCTCGACCAACCTGCGCGAGATCGAGACCGCTCTGGATCCGATCTA CCAGTCGAAGTCCAACACCTACCAGTTCACCCTGAACTACGACATCACCGACGAACTGACCTTCACGTCGATGACCTCGT ACGGCAAGGGCGATGTCTGGACCAAACAGGACTACAACCGCAACGTCGCGACGGTGCCGTTCAACAACACGCCGTTCACG CCAGGCGGCTTCTTCACCGACCCGCAAGTCGGGCGGACCAACAAGTTCACCACCATCGACGTCTCGTCGGGCCGCTCCGA GCAGTTCAGCCAGGAGTTCCGCCTGCAGTCGGCGTTCGACGGCCCGCTGAACTTCACGGTCGGCGGCATCCACTTCACCT ACCGGACGCTGACCGACTACTATGTGATCGGCAACTCGCTGACGCTTTCGTCGCTGGCGCTGAACTTCTCGAACACCGGC AATCCCAACTGCAATCCGGCGACCACCGCCCGCTGCATCGGGATTGACACCTCGGCCGATCCGACCGGCGACGGCCACAA CTACTATCTGAACCGCACGCCCTATAATCTGGTCTCGGACGCGCTGCTGGGCGAGGTGTACTATCAGGTCAACGAGGATC TGAAGTTCACCCTGGGCGTGCGCCAGACGCGCGACAAGAAGGCGGTCAAGAACTACTCGACCGTTCTGCTCGCCCCGGGC TACGGCCTGACGCTGAACCCGACCAACCCCGATCAGCGGGCGCGCTTCAACGAGACCACGGGCCGGGTGGGCGTCGACTA CAAGGCGCGCCTGGGCTTCACCGACGACACCCTGCTCTATGCCTTCTACTCCAAGGGCTACAAGGGCGGCGGCATCAACC CGGGCGTCCCCGCCAACTCGGTCGGCATCCAGCAGACCTTCGATCCGGAGTTCGTCAACGCGATCGAAGTCGGCACCAAG AACACCCTGCTGGGCGGCAGCCTGCTGCTGAACGCGACCGCCTTCTCGTATGACTACCAGGGCTACCAGATCTCCAAGAT CGTGAACCGCACCTCGGTGAACGAGAACGTCGACGCCAAGGTCCACGGCTTCGAGCTGGAGTCTATCTGGTCGCCGGTGC GCAACCTGCGCCTGAACGCCAACATCGGTTACCTCAAGACCAAGATCGGCGATGGCGTCAGCTCGATCGACACCATGAAC CGCACCCAGTCGAACCCGGCCTATACGGTGGTCAAGGTCGGTCCGAACGCCTCGTCGGTCGGCGCCAACTGCGTGCTCAG CACCGTAGGCGTCGCTACGATCCTGGGCGCCGGCGCGGGGGCGACCCTGCCCTTCGCGTGCTCGGGCGCGGCCGCCTATC AAGGCTTCCTGGCGGCCCCGGCCGCGGCCGGCGGCGCAGGCCTTCCGGCGCCCACGGCGGCGTTCCTCGCCAACGCGACG GGCCTCTATACCTACGGCGCTGGCTATTCGATCGAAGGCACGGCGGCGAACCTGTCGGGCAACGAACTCCCGAACTCGCC GCACTGGACCACTTCGGTGGGCGCCCAGTACACCTTCGAGCTGTCGAACGGCTGGTCTGCGACCCTGCGCGGCGACTACT ACCGCCAGAGCAAGCAGTACGCCCGCGTCTACAACACCGCCTACGATCAGCTGAAGTCCTGGGACAACGGCAACATCACC CTGAAGGTCGAGAAGCCCGAGTGGGGCGTGGCCATCGACGCCTACGTCAAGAACATCGGCAACAAGACGCCGATCGTCGA CGCCTACACCACCGACGACAGCTCGGGCCTGTTCACCAACGTGATCACCGCCGAGCCTCGCCTGTACGGCATCGCGATCA CCAAGTCCTGGTAA
Upstream 100 bases:
>100_bases GCCGTACGCCCACGCGGTGAAAACAGTACGGCGCCGAGGAAACATCGACGCTCGCAGGCTCCATCCATAAGGCGCCGCTT GCGTTCAGGGAGGGAATTCA
Downstream 100 bases:
>100_bases ACCCCAGGACGAGCGCCTCGAGGGGCGGCGGGTCATCCGCCGCCCCTTTTCGCGCCAGTTTTCAATCTTGAAGCCCCGCC GCCTCGGGCCGCGACAATGA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 937; Mature: 936
Protein sequence:
>937_residues MSQTLRMRSLLVMGASAVAISGFAVPAFAQQNTTVIEELVVTAQKKEEALQDVPIAVSAFSQDSLEAQKIDGGPNLQLAI PNVTFAKSNFTNSFNFQIRGIGAKAVGASADQGVGVHMNNAPQQSGNLFEAEFYDVERVEVLRGPQGTLYGRNATGGVVN VITAKPTDMFEANLRAEYGNYNSMKLRGMLNVPIFGDKLAVRLSGTSLKRDGFVTNTFNGNKVDDRDLYSTRVQVMFNPT EKLRTNFLWERFHENDSRARTGKQLCTKDNGPATVGGVPTGASRVFLTQGCLSASLYTPAAYGTVNTSGSLTGLLGNIFG FTSGDVNAGDTTSTNLREIETALDPIYQSKSNTYQFTLNYDITDELTFTSMTSYGKGDVWTKQDYNRNVATVPFNNTPFT PGGFFTDPQVGRTNKFTTIDVSSGRSEQFSQEFRLQSAFDGPLNFTVGGIHFTYRTLTDYYVIGNSLTLSSLALNFSNTG NPNCNPATTARCIGIDTSADPTGDGHNYYLNRTPYNLVSDALLGEVYYQVNEDLKFTLGVRQTRDKKAVKNYSTVLLAPG YGLTLNPTNPDQRARFNETTGRVGVDYKARLGFTDDTLLYAFYSKGYKGGGINPGVPANSVGIQQTFDPEFVNAIEVGTK NTLLGGSLLLNATAFSYDYQGYQISKIVNRTSVNENVDAKVHGFELESIWSPVRNLRLNANIGYLKTKIGDGVSSIDTMN RTQSNPAYTVVKVGPNASSVGANCVLSTVGVATILGAGAGATLPFACSGAAAYQGFLAAPAAAGGAGLPAPTAAFLANAT GLYTYGAGYSIEGTAANLSGNELPNSPHWTTSVGAQYTFELSNGWSATLRGDYYRQSKQYARVYNTAYDQLKSWDNGNIT LKVEKPEWGVAIDAYVKNIGNKTPIVDAYTTDDSSGLFTNVITAEPRLYGIAITKSW
Sequences:
>Translated_937_residues MSQTLRMRSLLVMGASAVAISGFAVPAFAQQNTTVIEELVVTAQKKEEALQDVPIAVSAFSQDSLEAQKIDGGPNLQLAI PNVTFAKSNFTNSFNFQIRGIGAKAVGASADQGVGVHMNNAPQQSGNLFEAEFYDVERVEVLRGPQGTLYGRNATGGVVN VITAKPTDMFEANLRAEYGNYNSMKLRGMLNVPIFGDKLAVRLSGTSLKRDGFVTNTFNGNKVDDRDLYSTRVQVMFNPT EKLRTNFLWERFHENDSRARTGKQLCTKDNGPATVGGVPTGASRVFLTQGCLSASLYTPAAYGTVNTSGSLTGLLGNIFG FTSGDVNAGDTTSTNLREIETALDPIYQSKSNTYQFTLNYDITDELTFTSMTSYGKGDVWTKQDYNRNVATVPFNNTPFT PGGFFTDPQVGRTNKFTTIDVSSGRSEQFSQEFRLQSAFDGPLNFTVGGIHFTYRTLTDYYVIGNSLTLSSLALNFSNTG NPNCNPATTARCIGIDTSADPTGDGHNYYLNRTPYNLVSDALLGEVYYQVNEDLKFTLGVRQTRDKKAVKNYSTVLLAPG YGLTLNPTNPDQRARFNETTGRVGVDYKARLGFTDDTLLYAFYSKGYKGGGINPGVPANSVGIQQTFDPEFVNAIEVGTK NTLLGGSLLLNATAFSYDYQGYQISKIVNRTSVNENVDAKVHGFELESIWSPVRNLRLNANIGYLKTKIGDGVSSIDTMN RTQSNPAYTVVKVGPNASSVGANCVLSTVGVATILGAGAGATLPFACSGAAAYQGFLAAPAAAGGAGLPAPTAAFLANAT GLYTYGAGYSIEGTAANLSGNELPNSPHWTTSVGAQYTFELSNGWSATLRGDYYRQSKQYARVYNTAYDQLKSWDNGNIT LKVEKPEWGVAIDAYVKNIGNKTPIVDAYTTDDSSGLFTNVITAEPRLYGIAITKSW >Mature_936_residues SQTLRMRSLLVMGASAVAISGFAVPAFAQQNTTVIEELVVTAQKKEEALQDVPIAVSAFSQDSLEAQKIDGGPNLQLAIP NVTFAKSNFTNSFNFQIRGIGAKAVGASADQGVGVHMNNAPQQSGNLFEAEFYDVERVEVLRGPQGTLYGRNATGGVVNV ITAKPTDMFEANLRAEYGNYNSMKLRGMLNVPIFGDKLAVRLSGTSLKRDGFVTNTFNGNKVDDRDLYSTRVQVMFNPTE KLRTNFLWERFHENDSRARTGKQLCTKDNGPATVGGVPTGASRVFLTQGCLSASLYTPAAYGTVNTSGSLTGLLGNIFGF TSGDVNAGDTTSTNLREIETALDPIYQSKSNTYQFTLNYDITDELTFTSMTSYGKGDVWTKQDYNRNVATVPFNNTPFTP GGFFTDPQVGRTNKFTTIDVSSGRSEQFSQEFRLQSAFDGPLNFTVGGIHFTYRTLTDYYVIGNSLTLSSLALNFSNTGN PNCNPATTARCIGIDTSADPTGDGHNYYLNRTPYNLVSDALLGEVYYQVNEDLKFTLGVRQTRDKKAVKNYSTVLLAPGY GLTLNPTNPDQRARFNETTGRVGVDYKARLGFTDDTLLYAFYSKGYKGGGINPGVPANSVGIQQTFDPEFVNAIEVGTKN TLLGGSLLLNATAFSYDYQGYQISKIVNRTSVNENVDAKVHGFELESIWSPVRNLRLNANIGYLKTKIGDGVSSIDTMNR TQSNPAYTVVKVGPNASSVGANCVLSTVGVATILGAGAGATLPFACSGAAAYQGFLAAPAAAGGAGLPAPTAAFLANATG LYTYGAGYSIEGTAANLSGNELPNSPHWTTSVGAQYTFELSNGWSATLRGDYYRQSKQYARVYNTAYDQLKSWDNGNITL KVEKPEWGVAIDAYVKNIGNKTPIVDAYTTDDSSGLFTNVITAEPRLYGIAITKSW
Specific function: Receptor for ferric vibriobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=164, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 100934; Mature: 100803
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTLRMRSLLVMGASAVAISGFAVPAFAQQNTTVIEELVVTAQKKEEALQDVPIAVSAF CCCHHHHHHHHHCCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC SQDSLEAQKIDGGPNLQLAIPNVTFAKSNFTNSFNFQIRGIGAKAVGASADQGVGVHMNN CCCCCCCEECCCCCCEEEEECCEEEECCCCCCEEEEEEEEECCHHCCCCCCCCCEEEECC APQQSGNLFEAEFYDVERVEVLRGPQGTLYGRNATGGVVNVITAKPTDMFEANLRAEYGN CCCCCCCEEEEEECCCEEEHEEECCCCEEEECCCCCCEEEEEECCCCHHHCCCEEEECCC YNSMKLRGMLNVPIFGDKLAVRLSGTSLKRDGFVTNTFNGNKVDDRDLYSTRVQVMFNPT CCCEEEEEEEECCEECCEEEEEEECCEECCCCCEEECCCCCCCCCCHHCEEEEEEEECCH EKLRTNFLWERFHENDSRARTGKQLCTKDNGPATVGGVPTGASRVFLTQGCLSASLYTPA HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCHHCCCCCCC AYGTVNTSGSLTGLLGNIFGFTSGDVNAGDTTSTNLREIETALDPIYQSKSNTYQFTLNY CCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE DITDELTFTSMTSYGKGDVWTKQDYNRNVATVPFNNTPFTPGGFFTDPQVGRTNKFTTID CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE VSSGRSEQFSQEFRLQSAFDGPLNFTVGGIHFTYRTLTDYYVIGNSLTLSSLALNFSNTG ECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCC NPNCNPATTARCIGIDTSADPTGDGHNYYLNRTPYNLVSDALLGEVYYQVNEDLKFTLGV CCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHEECCCEEEEECC RQTRDKKAVKNYSTVLLAPGYGLTLNPTNPDQRARFNETTGRVGVDYKARLGFTDDTLLY CCCCHHHHHCCCCEEEEECCCCEEECCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCEEE AFYSKGYKGGGINPGVPANSVGIQQTFDPEFVNAIEVGTKNTLLGGSLLLNATAFSYDYQ EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEECCEEEEEEEEEEEECC GYQISKIVNRTSVNENVDAKVHGFELESIWSPVRNLRLNANIGYLKTKIGDGVSSIDTMN CEEHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCEEEECCCCEEEEECCCCHHHHHHHH RTQSNPAYTVVKVGPNASSVGANCVLSTVGVATILGAGAGATLPFACSGAAAYQGFLAAP CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHCCHHCCC AAAGGAGLPAPTAAFLANATGLYTYGAGYSIEGTAANLSGNELPNSPHWTTSVGAQYTFE CCCCCCCCCCCHHHHHHCCCEEEEECCCEEECCEEECCCCCCCCCCCCEEEECCCEEEEE LSNGWSATLRGDYYRQSKQYARVYNTAYDQLKSWDNGNITLKVEKPEWGVAIDAYVKNIG ECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHCC NKTPIVDAYTTDDSSGLFTNVITAEPRLYGIAITKSW CCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEEECC >Mature Secondary Structure SQTLRMRSLLVMGASAVAISGFAVPAFAQQNTTVIEELVVTAQKKEEALQDVPIAVSAF CCHHHHHHHHHCCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC SQDSLEAQKIDGGPNLQLAIPNVTFAKSNFTNSFNFQIRGIGAKAVGASADQGVGVHMNN CCCCCCCEECCCCCCEEEEECCEEEECCCCCCEEEEEEEEECCHHCCCCCCCCCEEEECC APQQSGNLFEAEFYDVERVEVLRGPQGTLYGRNATGGVVNVITAKPTDMFEANLRAEYGN CCCCCCCEEEEEECCCEEEHEEECCCCEEEECCCCCCEEEEEECCCCHHHCCCEEEECCC YNSMKLRGMLNVPIFGDKLAVRLSGTSLKRDGFVTNTFNGNKVDDRDLYSTRVQVMFNPT CCCEEEEEEEECCEECCEEEEEEECCEECCCCCEEECCCCCCCCCCHHCEEEEEEEECCH EKLRTNFLWERFHENDSRARTGKQLCTKDNGPATVGGVPTGASRVFLTQGCLSASLYTPA HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCHHCCCCCCC AYGTVNTSGSLTGLLGNIFGFTSGDVNAGDTTSTNLREIETALDPIYQSKSNTYQFTLNY CCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE DITDELTFTSMTSYGKGDVWTKQDYNRNVATVPFNNTPFTPGGFFTDPQVGRTNKFTTID CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE VSSGRSEQFSQEFRLQSAFDGPLNFTVGGIHFTYRTLTDYYVIGNSLTLSSLALNFSNTG ECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCC NPNCNPATTARCIGIDTSADPTGDGHNYYLNRTPYNLVSDALLGEVYYQVNEDLKFTLGV CCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHEECCCEEEEECC RQTRDKKAVKNYSTVLLAPGYGLTLNPTNPDQRARFNETTGRVGVDYKARLGFTDDTLLY CCCCHHHHHCCCCEEEEECCCCEEECCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCEEE AFYSKGYKGGGINPGVPANSVGIQQTFDPEFVNAIEVGTKNTLLGGSLLLNATAFSYDYQ EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEECCEEEEEEEEEEEECC GYQISKIVNRTSVNENVDAKVHGFELESIWSPVRNLRLNANIGYLKTKIGDGVSSIDTMN CEEHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCEEEECCCCEEEEECCCCHHHHHHHH RTQSNPAYTVVKVGPNASSVGANCVLSTVGVATILGAGAGATLPFACSGAAAYQGFLAAP CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHCCHHCCC AAAGGAGLPAPTAAFLANATGLYTYGAGYSIEGTAANLSGNELPNSPHWTTSVGAQYTFE CCCCCCCCCCCHHHHHHCCCEEEEECCCEEECCEEECCCCCCCCCCCCEEEECCCEEEEE LSNGWSATLRGDYYRQSKQYARVYNTAYDQLKSWDNGNITLKVEKPEWGVAIDAYVKNIG ECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHCC NKTPIVDAYTTDDSSGLFTNVITAEPRLYGIAITKSW CCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1317381 [H]