Click here to switch to the map view.

The map label for this gene is mcpA [H]

Identifier: 16127375

GI number: 16127375

Start: 3387789

End: 3389615

Strand: Direct

Name: mcpA [H]

Synonym: CC_3145

Alternate gene names: 16127375

Gene position: 3387789-3389615 (Clockwise)

Preceding gene: 16127373

Following gene: 16127376

Centisome position: 84.34

GC content: 67.71

Gene sequence:

>1827_bases
ATGACGACCGCCATGAACATTCCCAAGAAGCTCAGCCTGTCGTTCGTCTTCATCTGCGTTTCCGCAGCCATCATGATGGT
CGTCTTCCTGGCGACGATCCTGATGATCCGCGCCTCGACGGAAAGCAGCAATCACAGCCAACAGATCCACGCGGACGCGC
TGGCGCTCGAGACGGCCATTCTGCGCCAGAACAGCCAGTTCCGCGGCTATCTCGTCACCGGCGACAGCACGTACCTGAAG
TCTTACTACGAGGGCCGGGATGAGTACGATCAGGTCTCGGCGAAGCTGGCCTCGACGCTCACCGATCCCGAGATGCTCAA
GCACATCGAAGACTCGCGCGTGGCGACCCTCGCCTGGCGCAAGGAGTGGGGCGATCGCCTGATCGAGGTGGTTAAGGCCG
GCCAGCGCGACGCCGCGCAGCAGGAAGTCCGTGACGCGGGCAAGAAGGTGCTGGTCAGCGCCGCAGTGCTGCCGCTGCGC
GAGATCCGCAACGCCGAGGTCAAGAACATCGCCCAGAACGGCGCGCGTCAGCAGACCGCCATCGTCACGGCGATCACGGC
CCTGATCATCGGCGGCATCGCCCTGATCACCATTGCGATGATGGCCTCGCGCATCCTCAGCCGCTCGATCGCCCGCCCGA
TCACGACTCTGACCGCCGCCATGACGCAGCTCGCGCGCGGCGACAATGAAATCTCCGTCGACGCCAACCGCGGCGACGAG
CTGGGCGACATGGCCCGCGCCGTGCTCGTGTTCCGCGACGCCGCCCTGGCCAAGGCCGAAGCCGACCGCGCCAAGGAAGA
GGCCGATCGCGCCAAGGCCGAGGCCGACCGCGCCAAGCTGGGCGCCGAGGCGGCCCAGCGCCGCGTGGTCGAGACCCTGG
ACACGGCCCTGGCGGCGCTGGCGTCCGGCGACCTGACCCACATCATCAGCAACCCGTTCGAGCCTGAGTACGAGCGCCTG
CGCCAGTCGTTCAACAGCGCCGTGGAAGGGCTCGAGCAGAGCATTTCCGGCGTCGCCCGCTCGGCCAAGAGCGTGCGTTC
GGGCGCCGCTGAGATCTACACGGCCTCCGAAGACCTCTCGCGCCGCACCGAACAGCAGGCCTCGCGCCTGCAAGAGACGA
CCACCGCGACCCAGCAGGTCACCGTCATGGTCGGCGAGACGGCGCAACGCGCCGCCGACGCCCGGACCGCCATCGAGGTC
GCGAACGGCAACGCCGCCGACGGCGGTGCGATCGTCAACGAAGCGATCTCGGCGATGGACGCCATCCAGACCAGCTCGGA
AGAGATCAGCCAGATCATCAACCTGATCGACAGCATCACCTTCCAGACCAACCTGCTGGCGCTGAACGCCGGTGTCGAAG
CCGCACGAGCCGGCGACGCGGGCAAGGGCTTCGCCGTCGTGGCCTCGGAAGTGCGCGCCCTGGCTCAGCGCTCGGCCGAC
GCCGCGCGGGATATCAAGACCCTCATCCACACGTCCTCGGAGCAGGTGGCCAGCGGCGTTCGCCGGGTCGGCGACACCGG
CCAGATGCTGACGCTCATCGGCTCGAAGATCGTCGACACCAACACGCTCATCAATGAGATCGCGCTGAACACCGAGACCC
AAGCCGACAATCTGAAGCAGGTCAGCAGCGCCGTCGCCAGCATGGACAGCATGACCCAGCAAAACGCGTCGATGGTGAAG
GAAGCGACGGCGGCCGCACGCAGCCTCGCCGGCGAAGCCGACGAGCTGGCCACCCTGGTCGCGCGCTTCCGGCTGCGCTC
GGCGGATTTCGGCCAGGCCGCGGCGCCCGCCGCGCGCTCCCTGAGGGCTGCAGGCGGTCGGGGCTAA

Upstream 100 bases:

>100_bases
GACGGCCGCGTGGCGCTAGGTCCGTCGCATAGGCGATTTCGCCTAGAGGACGGATCAGCGCCGCGGCCGCGCTGAGGACC
CGCCAGTGAGTATTGGAACG

Downstream 100 bases:

>100_bases
CCCCGGCGGCGGCGGCGCCGCCGCCCCCTCCATCAATCCATCCATCCATAGCTATAGCGTCGAGCGCCCCCACCGGAGCG
CTCGCGCCGGCACGCTTTCG

Product: methyl-accepting chemotaxis protein McpJ

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 608; Mature: 607

Protein sequence:

>608_residues
MTTAMNIPKKLSLSFVFICVSAAIMMVVFLATILMIRASTESSNHSQQIHADALALETAILRQNSQFRGYLVTGDSTYLK
SYYEGRDEYDQVSAKLASTLTDPEMLKHIEDSRVATLAWRKEWGDRLIEVVKAGQRDAAQQEVRDAGKKVLVSAAVLPLR
EIRNAEVKNIAQNGARQQTAIVTAITALIIGGIALITIAMMASRILSRSIARPITTLTAAMTQLARGDNEISVDANRGDE
LGDMARAVLVFRDAALAKAEADRAKEEADRAKAEADRAKLGAEAAQRRVVETLDTALAALASGDLTHIISNPFEPEYERL
RQSFNSAVEGLEQSISGVARSAKSVRSGAAEIYTASEDLSRRTEQQASRLQETTTATQQVTVMVGETAQRAADARTAIEV
ANGNAADGGAIVNEAISAMDAIQTSSEEISQIINLIDSITFQTNLLALNAGVEAARAGDAGKGFAVVASEVRALAQRSAD
AARDIKTLIHTSSEQVASGVRRVGDTGQMLTLIGSKIVDTNTLINEIALNTETQADNLKQVSSAVASMDSMTQQNASMVK
EATAAARSLAGEADELATLVARFRLRSADFGQAAAPAARSLRAAGGRG

Sequences:

>Translated_608_residues
MTTAMNIPKKLSLSFVFICVSAAIMMVVFLATILMIRASTESSNHSQQIHADALALETAILRQNSQFRGYLVTGDSTYLK
SYYEGRDEYDQVSAKLASTLTDPEMLKHIEDSRVATLAWRKEWGDRLIEVVKAGQRDAAQQEVRDAGKKVLVSAAVLPLR
EIRNAEVKNIAQNGARQQTAIVTAITALIIGGIALITIAMMASRILSRSIARPITTLTAAMTQLARGDNEISVDANRGDE
LGDMARAVLVFRDAALAKAEADRAKEEADRAKAEADRAKLGAEAAQRRVVETLDTALAALASGDLTHIISNPFEPEYERL
RQSFNSAVEGLEQSISGVARSAKSVRSGAAEIYTASEDLSRRTEQQASRLQETTTATQQVTVMVGETAQRAADARTAIEV
ANGNAADGGAIVNEAISAMDAIQTSSEEISQIINLIDSITFQTNLLALNAGVEAARAGDAGKGFAVVASEVRALAQRSAD
AARDIKTLIHTSSEQVASGVRRVGDTGQMLTLIGSKIVDTNTLINEIALNTETQADNLKQVSSAVASMDSMTQQNASMVK
EATAAARSLAGEADELATLVARFRLRSADFGQAAAPAARSLRAAGGRG
>Mature_607_residues
TTAMNIPKKLSLSFVFICVSAAIMMVVFLATILMIRASTESSNHSQQIHADALALETAILRQNSQFRGYLVTGDSTYLKS
YYEGRDEYDQVSAKLASTLTDPEMLKHIEDSRVATLAWRKEWGDRLIEVVKAGQRDAAQQEVRDAGKKVLVSAAVLPLRE
IRNAEVKNIAQNGARQQTAIVTAITALIIGGIALITIAMMASRILSRSIARPITTLTAAMTQLARGDNEISVDANRGDEL
GDMARAVLVFRDAALAKAEADRAKEEADRAKAEADRAKLGAEAAQRRVVETLDTALAALASGDLTHIISNPFEPEYERLR
QSFNSAVEGLEQSISGVARSAKSVRSGAAEIYTASEDLSRRTEQQASRLQETTTATQQVTVMVGETAQRAADARTAIEVA
NGNAADGGAIVNEAISAMDAIQTSSEEISQIINLIDSITFQTNLLALNAGVEAARAGDAGKGFAVVASEVRALAQRSADA
ARDIKTLIHTSSEQVASGVRRVGDTGQMLTLIGSKIVDTNTLINEIALNTETQADNLKQVSSAVASMDSMTQQNASMVKE
ATAAARSLAGEADELATLVARFRLRSADFGQAAAPAARSLRAAGGRG

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein. Note=Localized at the flagellum-bearing pole of the swarmer cell [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=291, Percent_Identity=43.298969072165, Blast_Score=190, Evalue=3e-49,
Organism=Escherichia coli, GI1787690, Length=287, Percent_Identity=41.8118466898955, Blast_Score=188, Evalue=7e-49,
Organism=Escherichia coli, GI2367378, Length=287, Percent_Identity=43.5540069686411, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1788195, Length=286, Percent_Identity=40.9090909090909, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1789453, Length=228, Percent_Identity=39.4736842105263, Blast_Score=147, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 64651; Mature: 64520

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAMNIPKKLSLSFVFICVSAAIMMVVFLATILMIRASTESSNHSQQIHADALALETAI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LRQNSQFRGYLVTGDSTYLKSYYEGRDEYDQVSAKLASTLTDPEMLKHIEDSRVATLAWR
HHCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
KEWGDRLIEVVKAGQRDAAQQEVRDAGKKVLVSAAVLPLREIRNAEVKNIAQNGARQQTA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
IVTAITALIIGGIALITIAMMASRILSRSIARPITTLTAAMTQLARGDNEISVDANRGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH
LGDMARAVLVFRDAALAKAEADRAKEEADRAKAEADRAKLGAEAAQRRVVETLDTALAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGDLTHIISNPFEPEYERLRQSFNSAVEGLEQSISGVARSAKSVRSGAAEIYTASEDLS
HCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECHHHHH
RRTEQQASRLQETTTATQQVTVMVGETAQRAADARTAIEVANGNAADGGAIVNEAISAMD
HHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH
AIQTSSEEISQIINLIDSITFQTNLLALNAGVEAARAGDAGKGFAVVASEVRALAQRSAD
HHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AARDIKTLIHTSSEQVASGVRRVGDTGQMLTLIGSKIVDTNTLINEIALNTETQADNLKQ
HHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VSSAVASMDSMTQQNASMVKEATAAARSLAGEADELATLVARFRLRSADFGQAAAPAARS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LRAAGGRG
HHHCCCCC
>Mature Secondary Structure 
TTAMNIPKKLSLSFVFICVSAAIMMVVFLATILMIRASTESSNHSQQIHADALALETAI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LRQNSQFRGYLVTGDSTYLKSYYEGRDEYDQVSAKLASTLTDPEMLKHIEDSRVATLAWR
HHCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
KEWGDRLIEVVKAGQRDAAQQEVRDAGKKVLVSAAVLPLREIRNAEVKNIAQNGARQQTA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
IVTAITALIIGGIALITIAMMASRILSRSIARPITTLTAAMTQLARGDNEISVDANRGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH
LGDMARAVLVFRDAALAKAEADRAKEEADRAKAEADRAKLGAEAAQRRVVETLDTALAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGDLTHIISNPFEPEYERLRQSFNSAVEGLEQSISGVARSAKSVRSGAAEIYTASEDLS
HCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECHHHHH
RRTEQQASRLQETTTATQQVTVMVGETAQRAADARTAIEVANGNAADGGAIVNEAISAMD
HHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH
AIQTSSEEISQIINLIDSITFQTNLLALNAGVEAARAGDAGKGFAVVASEVRALAQRSAD
HHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AARDIKTLIHTSSEQVASGVRRVGDTGQMLTLIGSKIVDTNTLINEIALNTETQADNLKQ
HHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VSSAVASMDSMTQQNASMVKEATAAARSLAGEADELATLVARFRLRSADFGQAAAPAARS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LRAAGGRG
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1577276; 11259647 [H]