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The map label for this gene is fecI [H]

Identifier: 16126940

GI number: 16126940

Start: 2920184

End: 2920702

Strand: Direct

Name: fecI [H]

Synonym: CC_2707

Alternate gene names: 16126940

Gene position: 2920184-2920702 (Clockwise)

Preceding gene: 16126937

Following gene: 16126941

Centisome position: 72.7

GC content: 65.13

Gene sequence:

>519_bases
ATGTCTCCGCTCGATGGTCAAATCACCGCTCCAGACGCCTCGCCCTCGGAGGACGGGACCCCGCCGCTCGCCGACGCCTA
TCTGCGTCATCTTGATTGGCTGACGGCGCTGTTGGCGCGCCGCTACCCGCAAGACGCCGACGACATTGCGCAGGACACCT
GGCTGAGGGTCCATGACTACCGCCCGCCCCGGCCGGTGCGCAGCCCGAGGTCTTTGTTGGCCCGTATCGCCCTGAACCTA
GCGGCAAGCCGCTTTCGCAAATCGTCTCGCGAGATCCCAACCGATCCCGACCATGCGCCCCTGGCCGGCCGGGTCATCGA
CGCCAGCCAGGAGCAGGCGGTCCTTTTTGAGCAGATGATGCTCGCCTTGCCGCCCAAGTTGCGCGATGTTTTCGTCCTGA
ACCATGTCAGGGGCCTCACCTATCGGGAAATCGCGCAACTGCGCGGCATCTCCGTCAAGGCGGTGGAGAAGCGAATGACC
CAGGCTATCGCGCGATGCGCCGACATGATCCGGGGCTAG

Upstream 100 bases:

>100_bases
TATGAGTAAAGTGAGACAATATCGTCGTGCGTTCGCGACGCTGCTGCGGGCACGGCTCAATCCGGATTCCACCCGCAACA
CTTGGCTTGGAATGCGGCCC

Downstream 100 bases:

>100_bases
GCGGATCACGCCATGATCGATGACCAAGCCAAGGCTGCAAACGCTCAGCCCGGCGGGGCGGAACCCTCCGGTGCGCGGGA
CAGGCGCGCGCGCGACGAGG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSPLDGQITAPDASPSEDGTPPLADAYLRHLDWLTALLARRYPQDADDIAQDTWLRVHDYRPPRPVRSPRSLLARIALNL
AASRFRKSSREIPTDPDHAPLAGRVIDASQEQAVLFEQMMLALPPKLRDVFVLNHVRGLTYREIAQLRGISVKAVEKRMT
QAIARCADMIRG

Sequences:

>Translated_172_residues
MSPLDGQITAPDASPSEDGTPPLADAYLRHLDWLTALLARRYPQDADDIAQDTWLRVHDYRPPRPVRSPRSLLARIALNL
AASRFRKSSREIPTDPDHAPLAGRVIDASQEQAVLFEQMMLALPPKLRDVFVLNHVRGLTYREIAQLRGISVKAVEKRMT
QAIARCADMIRG
>Mature_171_residues
SPLDGQITAPDASPSEDGTPPLADAYLRHLDWLTALLARRYPQDADDIAQDTWLRVHDYRPPRPVRSPRSLLARIALNLA
ASRFRKSSREIPTDPDHAPLAGRVIDASQEQAVLFEQMMLALPPKLRDVFVLNHVRGLTYREIAQLRGISVKAVEKRMTQ
AIARCADMIRG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=148, Percent_Identity=33.7837837837838, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19298; Mature: 19167

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLDGQITAPDASPSEDGTPPLADAYLRHLDWLTALLARRYPQDADDIAQDTWLRVHDY
CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
RPPRPVRSPRSLLARIALNLAASRFRKSSREIPTDPDHAPLAGRVIDASQEQAVLFEQMM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH
LALPPKLRDVFVLNHVRGLTYREIAQLRGISVKAVEKRMTQAIARCADMIRG
HHCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPLDGQITAPDASPSEDGTPPLADAYLRHLDWLTALLARRYPQDADDIAQDTWLRVHDY
CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
RPPRPVRSPRSLLARIALNLAASRFRKSSREIPTDPDHAPLAGRVIDASQEQAVLFEQMM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH
LALPPKLRDVFVLNHVRGLTYREIAQLRGISVKAVEKRMTQAIARCADMIRG
HHCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]