Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 16125799

GI number: 16125799

Start: 1715711

End: 1716070

Strand: Direct

Name: rpoZ

Synonym: CC_1552

Alternate gene names: 16125799

Gene position: 1715711-1716070 (Clockwise)

Preceding gene: 16125798

Following gene: 16125800

Centisome position: 42.71

GC content: 64.72

Gene sequence:

>360_bases
ATGGCCCGCGTCACCGTCGAAGATTGCGTCGAGAAGGTTCCGAACCGCTTCGCGCTCGTTCTGCTCTCGGCCCACCGCGC
TCGCGGCATTTCCGCCGGCGCCGCGCTGATGGTCGACCGCGATAACGACAAGAACCCGGTTGTCGCTCTGCGCGAGATCG
CCGACGACGTGATCGACCACGAAGGCCTTAAGGAACACCTCATCAGCACGCTGCAGCGCGTTGACGAGCACACCGAGGCC
GAGGAAGAGGCCGAAACCCTGGCCCTGCTGGCCGATCCCAGCCACATGCAGATGAGCGAACTGGAACTGGTCCGCGCGCT
GCAAAGCGACCGAGACGGTGGTCAGGAGGAGCGGTACTGA

Upstream 100 bases:

>100_bases
ATAAGCGCCCGCTCGCGAAAGCAGGATGCTCGTGCGCGGCGTTGCGTGTCGCGGCACAGAAGCCTATTTTGCGATTGCTT
ACCGGCAGCCCGAGGAACTC

Downstream 100 bases:

>100_bases
GCCCCGACGGCGCAGACCCTCTGACCCTTGAAGCGGTCGATCAGACCGCTCCATCCGAACGCGCGCCGGATTCGCCCCCC
ACGGGGACCGAATCGGGCGC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDHEGLKEHLISTLQRVDEHTEA
EEEAETLALLADPSHMQMSELELVRALQSDRDGGQEERY

Sequences:

>Translated_119_residues
MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDHEGLKEHLISTLQRVDEHTEA
EEEAETLALLADPSHMQMSELELVRALQSDRDGGQEERY
>Mature_118_residues
ARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDHEGLKEHLISTLQRVDEHTEAE
EEAETLALLADPSHMQMSELELVRALQSDRDGGQEERY

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=51.5625, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CAUCN (B8H618)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002516994.1
- GeneID:   7331599
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_01621
- OMA:   PEEDSMA
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 13272; Mature: 13141

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDH
CCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
EGLKEHLISTLQRVDEHTEAEEEAETLALLADPSHMQMSELELVRALQSDRDGGQEERY
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDH
CCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
EGLKEHLISTLQRVDEHTEAEEEAETLALLADPSHMQMSELELVRALQSDRDGGQEERY
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA